jdidion / atropos

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Implement non-internal adapters enhancement

#119 opened Aug 14, 2020 by jdidion

Add configuration option to choose which library to use for reading BAM enhancement

#99 opened May 8, 2020 by jdidion

Add support for output to BAM enhancement

#95 opened Apr 21, 2020 by plijnzaad 2.0

Push latest version to DockerHub chore

#93 opened Mar 9, 2020 by jdidion

Update sequencing_adapters.fa chore help wanted

#92 opened Feb 10, 2020 by amizeranschi 2.0

Add option to overwrite reads with nextseq low quality enhancement

#82 opened Jun 28, 2019 by jessrosenfield 2.1

gzip error code -9, different than issue #62? bug norepro

#78 opened Dec 17, 2018 by pkMyt1

option to support -a "ADAPTER;max_error_rate=0.2;min_overlap=5" enhancement

#75 opened Nov 22, 2018 by MarinusVL 2.1

Detect adapters from overhangs of aligned inserts. enhancement

#65 opened Mar 16, 2018 by jdidion 2.0

Add option to disable use of system gzip enhancement

#62 opened Mar 15, 2018 by gmagoon 2.1

Trimming Thruplex adapters enhancement

#55 opened Dec 27, 2017 by pkMyt1 2.2

Config file vs cli for parameters enhancement

#53 opened Dec 20, 2017 by pkMyt1 2.1

RFE: SImilar options to trimmomatic's CROP enhancement

#50 opened Oct 10, 2017 by lbeltrame 2.1

Detect command should determine whether adapters are 5' or 3' enhancement

#26 opened Jun 3, 2017 by jdidion 2.2

Improve heuristic detection for short reads enhancement

#25 opened Jun 3, 2017 by jdidion 2.2

Improve documentation on known adapters file enhancement

#24 opened Jun 3, 2017 by jdidion 2.2

Automatically detect adapter sequences during trim enhancement

#6 opened Mar 1, 2017 by jdidion 2.1

Add nanopore-specific options enhancement

#5 opened Feb 15, 2017 by jdidion 2.2

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