crispr

List of software/websites/databases/other stuff for genome engineering

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

Mining CRISPRs in Environmental Datasets

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

FlashFry: The rapid CRISPR target site characterization tool

Synthego ICE - Inference of CRISPR Editing software

🌎 Complex Topics Explained For Your Level And Background. ✏️

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

The CRISPR assembler

Predicting Cell Health with Morphological Profiles

Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

Bioinformatics tool for counting guides in CRISPR-screen studies.

A software tool for personalized and allele-specific CRISPR editing.

GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens

Analysis package for processing counts from genome-wide CRISPR/Cas9 screens

[Currently undergoing renovations] A computational workflow for designing libraries of guide RNAs for CRISPR base editing

Python module to analyse CRISPR-based libraries

A gRNA database generation tool.

Integration of pharmacological and drop-out CRISPR-Cas9 screens

CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).