#
ncbi-sra
Here are 10 public repositories matching this topic...
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
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Mar 30, 2020 - Python
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
bioinformatics
bioinformatics-pipeline
phylogenetics
orthology
homology
ncbi-sra
gene-sequence-retrieval
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Apr 2, 2021 - Python
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
python
bioinformatics
rna-seq
conda
bioinformatics-pipeline
bioconda
bioinformatics-analysis
rna-seq-pipeline
ncbi-sra
rna-seq-workflows
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Jun 4, 2021 - Python
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
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Jul 12, 2021 - HTML
Pulls Metadata from NCBI based on Sample name or SRR #
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Apr 27, 2021 - PowerShell
Extract metadata from biosamples in NCBI
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Apr 12, 2021 - Python
frequency of high level ranks in sequence databases
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Jan 10, 2022 - Python
The Docker integration for the r2g project.
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Updated
Aug 10, 2020 - Dockerfile
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Google colab now supports Python 3.7, which is the minimum requirement for pysradb. All the notebooks in
notebooks/need to be transitioned to Python 3.7 (they stopped working from pysradb 1.0 onwards)