DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Data intensive science for everyone.
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
A cool place to store your Hi-C
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
viral-ngs: command line tools and wrappers for processing raw viral genomic data
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Extract 3D contacts (.pairs) from sequencing alignments
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Publication quality NGS track plotting
Accurate and flexible loops calling tool for 3D genomic data.
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
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