Here are
30 public repositories
matching this topic...
Structural variant and indel caller for mapped sequencing data
Strelka2 germline and somatic small variant caller
Structural variation and indel detection by local assembly
Microassembly based somatic variant caller for NGS data
Updated
Aug 13, 2021
Java
A method for variant graph genotyping based on exact alignment of k-mers
The Platinum Genomes Truthset
Generic germline variant annotation pipeline
Updated
Aug 25, 2021
Python
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Updated
Aug 11, 2021
JavaScript
Dockstore implementation of CGP core WGS analysis
Updated
Jun 8, 2020
Shell
A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
Barton and Zeng (2019) - Pipeline for great tit indel analysis.
Updated
Apr 8, 2019
Python
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
Updated
May 19, 2021
Python
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
Updated
Jul 13, 2021
Shell
xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
Updated
Oct 21, 2020
Python
A Platypus-based variant calling pipeline for cancer data
Updated
Jan 20, 2020
Python
Scripts used in MDV project
Updated
Jul 13, 2017
Perl
gappy2 is the successor of gappy v1
Updated
Jul 6, 2021
Python
🐳 Dockerized WES pipeline for variants identification in mathced tumor-normal samples
Updated
May 27, 2020
Python
A Platypus-based workflow for indel calling
Updated
Jun 23, 2021
Python
Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.
Updated
Oct 30, 2018
Python
Dockstore implementation of CGP core WXS analysis
Updated
Jun 4, 2020
Shell
NGS data analysis scripts for HBV elimination research group
Updated
Jun 23, 2021
Python
MitoMut is a tool to call mitochondrial deletions from next generation sequencing (NGS) data
Updated
Oct 21, 2020
Python
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/)
Fast and accurate single sample SNV caller
Updated
Jun 22, 2021
Python
gappy extracts splids (split-inducing indels) from multiple sequence alignments.
Barton and Zeng (2018) - Pipeline for testing anavar with simulated data.
Updated
Apr 5, 2018
Python
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