Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Python package for generating Markov state models

Examples for SDAccel 2017.1+ on AWS F1 instances

An interactive visual simulator for distance-based protein folding

A bash script for an automated Rosetta Abinitio folding simulation on an HPC

A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.

OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling

Lightning-Fast Template-free Protein Folding based on Predicted Residue Contacts and Secondary Structure

CTB project

Protein structure prediction using optimization methods from the field of machine learning

A Monte-Carlo Code: Sequential Importance Sampling with Pilot-Exploration Resampling (SISPER) Applied to a 2D Protein Folding

sbm-tools is a simple python package for creating, modifying, and maintaining input files for native Structure-Based Model simulations to be used with the popular simulation software GROMACS.

thesis defense presentation

Protein folding simulator

Hybridized distance- and contact-based hierarchical protein folding