biojulia

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Here are 13 public repositories matching this topic...

BioJulia / Bio.jl

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[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

bioinformatics genomics biology deprecated dna biojulia biojulia-packages

Updated May 27, 2020
Julia

BioJulia / BioSequences.jl

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Biological sequences for the julia language

bioinformatics biology biological-sequences biojulia

Updated Jul 24, 2021
Julia

BioJulia / BioStructures.jl

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A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

bioinformatics biology structural-biology pdb julia protein-structure structural-bioinformatics biojulia

Updated Jun 17, 2021
Julia

BioJulia / BioAlignments.jl

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Sequence alignment tools

bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis biojulia smith-waterman-alignment sam-files

Updated Jul 22, 2021
Julia

BioJulia / FASTX.jl

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Parse and process FASTA and FASTQ formatted files of biological sequences.

parsing julia bio file-format fasta fastq-format fastq fastq-files fasta-format biojulia fasta-files

Updated Jul 17, 2021
Julia

BioJulia / BioSymbols.jl

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Nucleic and amino acid primitive types

bioinformatics biology computational-biology biological-data-analysis amino-acids nucleotides nucleic-acids biojulia

Updated Jun 16, 2021
Julia

BioJulia / XAM.jl

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Parse and process SAM and BAM formatted files

bam-files bioinformatics sam bam biojulia sam-files sam-format bam-format

Updated Jul 16, 2021
Julia

BioJulia / BioJuliaRegistry

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The BioJulia package registry

bioinformatics biology julia-packages biojulia biojulia-registry

Updated May 26, 2020

BioJulia / KmerAnalysis.jl

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K-mer counting algorithms and count-data utilities for the BioJulia framework

kmer kmer-frequency-count kmer-distribution kmer-counting biojulia kmer-composition kmers kmer-spectra

Updated Aug 29, 2020
Julia

BioJulia / ReadDatastores.jl

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Datastores for reads, not your papa's FASTQ files.

files bam-files bioinformatics genomics storage biology format sequencing fastq-format bioinformatics-data sam-bam fastq fastq-files biojulia sam-file sam-files genomics-data bam-format

Updated Jun 7, 2020
Julia

olgatsiouri1996 / biomisc_julia

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collection of miscellaneous command line bioinformatic scripts written in julia for speed

bioinformatics statistics cross-platform pdb fasta command-line-tool biojulia

Updated May 16, 2021
Julia

analytic-garden / BioJulia-and-BioPython

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A comparison of Julia and Python on a simple task.

python julia biopython biojulia

Updated Apr 5, 2021
Python

cjprybol / Mycelia

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-omics knowledge graphs with Julia & Neo4J

genomics neo4j julia metagenomics graph-database proteomics transcriptomics pangenomics biojulia julia-graphs

Updated Jul 15, 2021
Jupyter Notebook

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