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computational-chemistry

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ghutchis
ghutchis commented Apr 17, 2021

It would be great to run static analysis tools on pull requests.

One that looks really good:
https://github.com/marketplace/actions/clang-tidy-review

  • It only runs on changes in the pull request
  • Adds comments inline to the PR code
  • Can use compile_commands.json (-DCMAKE_EXPORT_COMPILE_COMMANDS=ON to cmake)

An example with similar Qt build process:
https://github.com/Mudlet/M

freud
bdice
bdice commented Apr 14, 2021

Is your feature request related to a problem? Please describe.
Occasionally I need to construct a NeighborList from bond topology data, which is currently somewhat hard to do. I've written the pattern below at least a dozen times, and it would be much better as a single function.

Describe the solution you'd like
A new class method like `NeighborList.from_system(system, indices, weight

ajjackson
ajjackson commented Apr 24, 2018

Summary of discussion with @utf and @scanlond based on user feedback.

  • Users can get confusing/incorrect results when using kgen with a non-primitive POSCAR
  • kgen warns that results may be incorrect and writes a POSCAR_prim file along with a KPOINTS which corresponds to that primitive/standard cell setting.
  • If the user ignores this warning and uses their current POSCAR with this

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