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computational-chemistry
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Is your feature request related to a problem? Please describe.
Occasionally I need to construct a NeighborList from bond topology data, which is currently somewhat hard to do. I've written the pattern below at least a dozen times, and it would be much better as a single function.
Describe the solution you'd like
A new class method like `NeighborList.from_system(system, indices, weight
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doctests will actually run the code-blocks and ensure that you get the expected output. This should prevent documentation from going out of date or having silly typos.
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We should make a pass (namely after the SQL change) to ensure status attributes are consistent throughout the code and all pull from one Enum pydantic model object if possible.
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Apr 26, 2021 - C++
Summary of discussion with @utf and @scanlond based on user feedback.
- Users can get confusing/incorrect results when using kgen with a non-primitive POSCAR
- kgen warns that results may be incorrect and writes a POSCAR_prim file along with a KPOINTS which corresponds to that primitive/standard cell setting.
- If the user ignores this warning and uses their current POSCAR with this
A standard test suite for QC programs should be curated that run over several dimensions at a minimum:
- Driver: energy/gradient/Hessian
- Reference: UHF/RHF
- Relevant procedures: optimization
We needed this yesterday on models.Molecule. Posting it in case anyone wants a starter project. Should test on example that does and doesn't have fix_com set. (True should give origin.)
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It would be great to run static analysis tools on pull requests.
One that looks really good:
https://github.com/marketplace/actions/clang-tidy-review
compile_commands.json(-DCMAKE_EXPORT_COMPILE_COMMANDS=ONtocmake)An example with similar Qt build process:
https://github.com/Mudlet/M