This is a feature request.

Organization of the submission locally is dependent on a defined directory structure that reflects the sample/lane. The current too demands that this structure is mirrored on the remote filesystem.

There is some convenience to uploading multiple files to a common folder on the staging server, organizing by different projects, subprojects and types of data. It wou

When the ingestion tests fire, they assume the system is up and running.
A preflight check is necessary to ensure it.

Proposed solution

At the moment, we only sleep for 120 seconds.

The new solution can check that:

• some containers are up
• some ports are open
• some settings are in place (rabbitmq, db, inbox, notifications, ...)

More precisely, it is important to check that:
*

Description

The Java code should have JDoc comments according to the google styleguide rules at https://google.github.io/styleguide/javaguide.html#s7-javadoc.

Proposed solution

Write JDoc where missing, and keep it updated for all future changes to the