Common Workflow Language

Repositories

• cwltool

  Common Workflow Language reference implementation

  science containers common-workflow-language cwl workflows
  Python Apache-2.0 154 210 337 (34 issues need help) 28 Updated Jul 17, 2020

• cwlviewer

  A web application to view and share Common Workflow Language workflows

  workflow common-workflow-language cwl workflows
  Java Apache-2.0 15 24 43 (2 issues need help) 2 Updated Jul 17, 2020

• cwl-v1.2

  Current development CWL v1.2 specification
  Common Workflow Language Apache-2.0 2 0 4 0 Updated Jul 17, 2020

• cwl-utils

  Python 3.6+ utilities for CWL

  common-workflow-language cwl commonwl
  Python GPL-3.0 5 10 10 (1 issue needs help) 0 Updated Jul 9, 2020

• cwltest

  Framework for testing CWL tools and workflows

  common-workflow-language cwl
  Python Apache-2.0 11 9 11 3 Updated Jul 8, 2020

• governance

  Holds public material generated by and for the CWL board.

  cwl
  HTML 0 0 2 0 Updated Jul 7, 2020

• .github

  Default community health files for the CWL project
  0 0 1 0 Updated Jul 7, 2020

• common-workflow-language.github.io

  GitHub pages source for the main CWL website, derived from https://github.com/common-workflow-language/cwl-website
  HTML 4 2 0 1 Updated Jul 6, 2020

• cwl-website

  www.commonwl.org

  common-workflow-language cwl
  Common Workflow Language Apache-2.0 11 4 5 1 Updated Jul 6, 2020

• common-workflow-language

  Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

  science workflow containers common-workflow-language cwl workflows commonwl
  Python Apache-2.0 170 1,136 235 (6 issues need help) 21 Updated Jul 3, 2020

• schema_salad

  Semantic Annotations for Linked Avro Data
  Python Apache-2.0 33 40 36 (3 issues need help) 3 Updated Jul 2, 2020

• for_decision_makers

  One page CWL explainer for Business/policy decision makers
  Apache-2.0 0 0 0 0 Updated Jul 2, 2020

• for_novices

  One page CWL explainer for workflow novices
  1 0 1 0 Updated Jul 2, 2020

• cwl-ex

  CWL experimental grammar
  JavaScript 0 9 3 0 Updated Jul 2, 2020

• GSoD-proposals-2019
  Apache-2.0 0 0 0 0 Updated Jul 2, 2020

• conformance

  Location to store the results of CWL conformance testing
  Apache-2.0 0 0 0 0 Updated Jul 2, 2020

• cwl-language-server

  A Language Server for CWL

  language-server common-workflow-language cwl commonwl
  Python Apache-2.0 1 2 2 0 Updated Jul 2, 2020

• cwl-intro-gui-workshop

  Materials to teach workshop about CWL using the Rabix Composer
  Common Workflow Language Apache-2.0 2 5 5 0 Updated Jul 2, 2020

• cwlprov-py

  cwlprov: Command line tool and Python API to explore Research Objects containing provenance of Common Workflow Language executions

  python provenance cwl bagit research-object prov
  Python Apache-2.0 1 1 0 0 Updated Jul 2, 2020

• cwlprov

  Profile for provenance research object of a CWL workflow run

  workflow linked-data rdf provenance cwl bagit research-object
  Apache-2.0 1 11 2 0 Updated Jul 2, 2020

• cwldep

  Common Workflow Language dependency manager
  Python Apache-2.0 1 6 0 0 Updated Jul 2, 2020

• cwl-v1.1

  Current stable CWL v1.1 specification

  cwl
  Common Workflow Language Apache-2.0 6 4 0 8 Updated Jul 2, 2020

• acd2cwl

  CWL generator for ACD (EMBOSS) files
  Python MIT 0 2 0 0 Updated Jul 2, 2020

• cwl-upgrader

  Upgrade CWL draft-3 to v1.0 syntax, or v1.0 to v1.1

  cwl commonwl
  Python Apache-2.0 2 2 6 0 Updated Jul 2, 2020

• pypi2cwl
  Python 0 0 0 0 Updated Jul 2, 2020

• workflow-service

  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
  Python Apache-2.0 19 26 23 0 Updated Jul 2, 2020

• ci.commonwl.org
  Shell Apache-2.0 1 2 2 0 Updated Jul 2, 2020

• cwlavro

  Auto-generated Avro classes for manipulating CWL (starting with Java). Works with v1.0
  Java Apache-2.0 3 5 0 0 Updated Jul 2, 2020

• logo

  CWL logo source

  cwl
  0 1 1 0 Updated Jul 2, 2020

• 2015-bosc

  Abstract and presentation material for the Bioinformatics Open Source Conference 2015
  Makefile 3 1 0 0 Updated Jul 2, 2020