Here are
260 public repositories
matching this topic...
A DSL for data-driven computational pipelines
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Updated
Aug 5, 2020
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Groovy
A curated list of nextflow based pipelines
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
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Jul 31, 2020
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Nextflow
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦
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May 11, 2020
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Python
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May 14, 2020
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Nextflow
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
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Jan 27, 2020
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Nextflow
Our VM/Docker sharing infrastructure and management component
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Aug 10, 2020
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Java
Python package with helper tools for the nf-core community.
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Aug 7, 2020
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Python
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
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Aug 7, 2020
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Nextflow
ChIP-seq peak-calling, QC and differential analysis pipeline.
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Aug 5, 2020
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Nextflow
A graphical user interface for distributed data processing of high throughput genomics
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Jul 22, 2020
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JavaScript
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Aug 10, 2020
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Groovy
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
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Aug 20, 2018
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Groovy
A flexible pipeline for complete analysis of bacterial genomes
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Aug 10, 2020
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HTML
GATK RNA-Seq Variant Calling in Nextflow
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Aug 10, 2020
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Nextflow
Example Nextflow pipelines and programming techniques
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May 18, 2020
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Nextflow
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
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Aug 3, 2020
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Nextflow
16S rRNA amplicon sequencing analysis workflow using QIIME2
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Jul 31, 2020
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Nextflow
Multi-sample somatic variant caller
ATAC-seq peak-calling, QC and differential analysis pipeline
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Jul 31, 2020
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Nextflow
Nextflow pipeline for analysis of direct RNA Nanopore reads
Google's DeepVariant variant caller as a Nextflow pipeline
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Jul 31, 2020
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Nextflow
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
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Nov 7, 2019
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Nextflow
An automated RNA-seq pipeline using Nextflow
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Aug 4, 2020
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Shell
A proof of concept RNA-Seq pipeline with Nextflow
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Feb 29, 2020
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Nextflow
Assembly and binning of metagenomes
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Aug 10, 2020
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Nextflow
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
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Jun 3, 2018
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Nextflow
GATK4 Best Practice Nextflow Pipeline
A proof of concept of RNAseq pipeline
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Aug 8, 2020
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Nextflow
🔬 De novo assembly of nanopore reads using nextflow
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Aug 5, 2020
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Nextflow
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