Here are
147 public repositories
matching this topic...
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
Structural variation and indel detection by local assembly
Dark variant of Windows 10 theme
Bayesian haplotype-based mutation calling
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Updated
Jan 24, 2018
Python
Odoo modules enabling dynamic product configuration
Updated
Jul 20, 2020
Python
Rare variant test software for next generation sequencing data
Population-scale genotyping using pangenome graphs
A Haskell library for open records and variants using closed type families and type literals
Updated
Aug 4, 2020
Haskell
MyVariant.info: A BioThings API for human variant annotations
Updated
Aug 10, 2020
Python
A Tool to Annotate and Prioritize Exome Variants
Updated
Jul 20, 2020
Java
Characterization of Germline variants
Updated
Apr 10, 2020
Python
xHLA: Fast and accurate HLA typing from short read sequence data
Updated
Oct 11, 2018
Jupyter Notebook
This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
Variant types in TypeScript
Updated
Jul 19, 2020
TypeScript
Data created for
www.STEPBible.org , licensed by Tyndale House Cambridge UK (CC BY-NC 4.0)
Web client for CIViC: Clinical Interpretations of Variants in Cancer
Updated
Aug 12, 2020
JavaScript
Updated
Mar 27, 2020
Dart
Multi-sample somatic variant caller
A plugin for Sylius that implements tier pricing
Backend Server for CIViC Project
Updated
Aug 11, 2020
HTML
Ordo: A minimalist language with row polymorphism
Numerical Encoding for Human Genetic Variants
A JavaScript library for creating websites, PWAs and hybrid apps.
Updated
Jul 16, 2020
HTML
simple viewer for variant call format using htslib
Command line tools for CMDB varaints browser
Updated
Dec 24, 2019
Python
Mutation Identification Pipeline. Read the latest documentation:
Updated
Aug 12, 2020
Perl
pathoscore evaluates variant pathogenicity tools and scores.
Updated
Jun 29, 2019
Python
Generic germline variant annotation pipeline
Updated
Jul 1, 2020
Python
A phenotype-based tool for variant prioritization in WES and WGS data
Updated
Jun 14, 2020
Java
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