It would be nice to add a params to choose the VEP genome assembly.
In most cases it is the --genome params, but I'm assuming it'll be easier to control if we have that as a separate params.
For example, it's currently not working with the --genome custom setting.
VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data. For algorithmic details, see Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.
It would be nice to add a params to choose the VEP genome assembly.
In most cases it is the
--genomeparams, but I'm assuming it'll be easier to control if we have that as a separate params.For example, it's currently not working with the
--genome customsetting.