Galaxy Project

Repositories

• galaxy

  Data intensive science for everyone.

  docker science workflow bioinformatics pipeline genomics workflow-engine
  Python 643 755 1,300 (132 issues need help) 150 Updated Aug 13, 2020

• usegalaxy-tools

  usegalaxy.* common tools
  Shell 17 7 6 7 Updated Aug 13, 2020

• planemo

  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

  cli sdk click usegalaxy commonwl
  Python 65 57 213 (14 issues need help) 7 Updated Aug 13, 2020

• usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  python ansible playbook usegalaxy
  Shell AFL-3.0 15 21 103 (1 issue needs help) 3 Updated Aug 13, 2020

• tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  tools usegalaxy toolshed wrappers iuc
  HTML MIT 253 79 178 (5 issues need help) 115 Updated Aug 13, 2020

• SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  usegalaxy 2019-ncov coronavirus covid covid19 covid-2019
  Jupyter Notebook MIT 61 101 6 5 Updated Aug 13, 2020

• galaxy-hub

  Galaxy Community Hub

  community documentation home homepage hub usegalaxy
  HTML 152 39 48 (1 issue needs help) 1 Updated Aug 12, 2020

• ansible-pulsar

  An Ansible role for managing a Pulsar (https://github.com/galaxyproject/pulsar) server.
  6 4 1 2 Updated Aug 12, 2020

• gxformat2

  Galaxy Workflow Format 2
  Python 2 4 5 0 Updated Aug 12, 2020

• training-material

  A collection of Galaxy-related training material

  training tutorial materials ngs metagenomics rnaseq proteomics
  HTML MIT 381 158 91 35 Updated Aug 12, 2020

• pulsar

  Distributed job execution application built for Galaxy
  Python Apache-2.0 33 30 52 (5 issues need help) 6 Updated Aug 11, 2020

• infrastructure-playbook

  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
  Python MIT 10 4 5 6 Updated Aug 7, 2020

• ansible-cvmfs

  An Ansible role for installing and configuring CernVM-FS (CVMFS)
  C 5 5 1 1 Updated Aug 5, 2020

• starforge-recipes

  Build recipes for Galaxy Starforge
  Shell MIT 6 0 7 1 Updated Aug 5, 2020

• cloudlaunch

  Easily launch cloud applications.

  python django angular cloud multi-cloud
  Python 35 37 26 1 Updated Aug 5, 2020

• ansible-galaxy-extras

  Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
  Shell 36 10 18 7 Updated Aug 4, 2020

• planemo-monitor

  Planemo scripting to monitor repositories and register tool containers.
  Shell 7 2 2 1 Updated Jul 29, 2020

• tools-devteam

  Contains a set of Galaxy Tools mostly written by the Galaxy Team.

  tools usegalaxy toolshed
  Python 82 34 76 11 Updated Jul 27, 2020

• galaxy-helm

  Minimal setup required to run Galaxy under Kubernetes
  TSQL MIT 26 18 11 4 Updated Jul 26, 2020

• ansible-common-roles

  A collection of simple Ansible roles for common (mostly system) tasks
  Python MIT 5 13 0 0 Updated Jul 24, 2020

• galaxy-lib Archived

  Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.

  python library usegalaxy
  Python 21 11 7 8 Updated Jul 22, 2020

• kc-align
  Python AFL-3.0 0 0 0 0 Updated Jul 22, 2020

• bioblend

  A Python library for interacting with Galaxy and CloudMan API

  api api-client usegalaxy cloudman
  Python MIT 87 67 33 4 Updated Jul 18, 2020

• admin-training

  Galaxy Admin Training

  training nginx ansible development admin tools cluster
  Shell 56 47 5 0 Updated Jul 18, 2020

• galaxykubeman-helm

  Helm chart for Galaxy KubeMan used for deploying Galaxy alongside its dependencies (NFS, CVMFS, and CloudMan)
  MIT 1 0 0 1 Updated Jul 16, 2020

• cloudlaunch-registry

  An application registry for CloudLaunch
  1 0 0 1 Updated Jul 16, 2020

• cloudman

  Easily create and manage compute clusters on any Cloud.

  usegalaxy cloudman
  Python 22 30 4 (1 issue needs help) 0 Updated Jul 16, 2020

• cloudlaunch-ui

  A user interface for the cloudlaunch app

  cloud angular5
  TypeScript MIT 9 6 8 0 Updated Jul 15, 2020

• GTN-community-paper-2020
  TeX 1 0 0 0 Updated Jul 15, 2020

• galaxy-docker-k8s

  An Ansible playbook for building a Galaxy container for Kubernetes.
  Shell MIT 6 4 1 0 Updated Jul 14, 2020