InterMine

Repositories

• covidmine-sitemap

  sitemap for covidmine
  0 0 0 0 Updated Sep 25, 2020

• im-docs

  Documentation for the InterMine project
  Perl MIT 15 3 3 2 Updated Sep 25, 2020

• bluegenes-depmap-screens-visualization

  Forked from AdrianBZG/bluegenes-depmap-screens-visualization
  JavaScript MIT 1 0 0 0 Updated Sep 25, 2020

• intermine-user-docs

  Documentation for using an InterMine webapp.
  CSS LGPL-3.0 5 2 4 2 Updated Sep 23, 2020

• intermine

  A powerful open source data warehouse system

  python java api open-source clojure opensource bioinformatics
  Java 339 170 235 (5 issues need help) 5 Updated Sep 15, 2020

• bluegenes-go-concept-relation
  JavaScript MIT 5 0 0 1 Updated Sep 12, 2020

• cross-repo-contributor-list
  JavaScript MIT 1 1 0 2 Updated Sep 12, 2020

• identifiers-widget

  embeddable js widget to display identifiers.org info on your page
  JavaScript 0 1 3 4 Updated Sep 12, 2020

• InterMineR

  R package for InterMine

  r genomics biology intermine
  R LGPL-2.1 16 15 16 (1 issue needs help) 0 Updated Sep 8, 2020

• intermine.github.io

  Homepage for intermine.org
  HTML 2 0 0 1 Updated Sep 7, 2020

• bluegenes

  A friendly next-generation interface for Genomic data discovery powered by InterMine

  clojure genomics clojurescript cljs intermine
  Clojure 44 59 101 (1 issue needs help) 6 Updated Sep 5, 2020

• intermine_compose

  Repo to handle docker orchestration in the cloud
  Python LGPL-2.1 4 2 2 0 Updated Sep 4, 2020

• im-tables

  Dynamic Result Table Library
  CoffeeScript 27 8 38 16 Updated Sep 4, 2020

• imjs

  InterMine Generic WebService Client Library
  JavaScript 10 6 10 (2 issues need help) 5 Updated Sep 4, 2020

• bluegenes-tool-cytoscape

  Thin wrapper around the cytoscape-intermine library to present intermine gene & protein interaction networks in bluegenes

  bluegenes-tool
  HTML 0 1 1 4 Updated Sep 3, 2020

• InterMine-Data-Browser-Tool

  Forked from AdrianBZG/InterMine-Data-Browser-Tool

  InterMine Data Browser: a tool for exploring semi-homogeneous biological datasets

  visualization interface intermine outreachy gsoc-2018 gsoc-2019 data-browser
  JavaScript 41 8 11 (8 issues need help) 3 Updated Sep 3, 2020

• ncbi-sequence-grabber

  to download sequences for CovidMine
  JavaScript LGPL-3.0 0 0 0 1 Updated Sep 2, 2020

• training-workshops

  List of InterMine training workshops and links to repos / materials
  CSS Apache-2.0 3 8 0 0 Updated Sep 2, 2020

• covidmine

  CovidMine
  Perl 0 1 0 0 Updated Aug 29, 2020

• imcljs

  clojurescript intermine core-async
  Clojure 6 2 14 1 Updated Aug 27, 2020

• humanmine

  HumanMine - an InterMine with human genomic data

  bioinformatics genomics biological-data-analysis genomics-visualization
  Perl 4 0 3 0 Updated Aug 24, 2020

• flymine-bio-sources

  Data sources for FlyMine

  java bioinformatics gene genetics biology postgresql drosophila
  Java 2 0 1 0 Updated Aug 20, 2020

• flymine

  FlyMine - an InterMine instance with Drosophila data
  Java 3 0 2 0 Updated Aug 20, 2020

• intermine-registry

  Registry to store and browse all known instances of InterMine. Developed during GSoC 2017 by Leonardo Kuffo

  heroku open-source mongodb genomics google-summer-of-code node-js intermine
  JavaScript LGPL-2.1 25 5 14 (7 issues need help) 6 Updated Aug 20, 2020

• intermine_boot

  A little app to spin up local containers in which to build an InterMine
  Python LGPL-2.1 12 4 9 0 Updated Aug 19, 2020

• intermine-scripts

  All scripts that used to be in the main intermine repository in bio/scripts and intermine/scripts
  PLpgSQL LGPL-2.1 7 1 6 (3 issues need help) 0 Updated Aug 18, 2020

• docker-intermine-gradle

  Docker for InterMine
  Shell LGPL-2.1 8 1 5 0 Updated Aug 14, 2020

• bluegenes-interaction-network
  JavaScript MIT 1 0 0 0 Updated Aug 13, 2020

• bluegenes-pathway-visualizer
  JavaScript MIT 1 0 0 0 Updated Aug 13, 2020

• bluegenes-jbrowse-tool

  Forked from yochannah/bluegenes-tool-jbrowse
  JavaScript MIT 2 0 0 0 Updated Aug 13, 2020