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185 followers · 133 following · 1.1k

Highlights

  • Arctic Code Vault Contributor

Organizations

@oerpub @wysiwhat @biojs @smithlabcode @conda-forge @bioconda

Pinned

  1. pysradb

    Package for fetching metadata and downloading data from SRA/ENA

    Python 104 28

  2. gencode_regions

    Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

    Jupyter Notebook 44 25

  3. rna-seq-snakemake

    Snakemake based pipeline for RNA-Seq analysis

    R 20 11

  4. pyseqlogo

    Python package to plot sequence logos

    Python 19 10

  5. hatex Archived

    'h'omeworks, 'a'ssignments 'tex' for courses at USC

    Jupyter Notebook 10 5

  6. fos-proposals

    💝 🐧 Archive of GSoC proposals

    Python 231 95

1,226 contributions in the last year

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Contribution activity

August 2020

Created an issue in YosefLab/scVI that received 10 comments

Reconstruction loss dependence on expression values

Using LDVAE/VAE, it appears as if the reconstruction loss is dependent on the expression level of the gene or the cell while at the same time the…

10 comments
58 contributions in private repositories Aug 3 – Aug 28

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