Science For Life Laboratory

Science for Life Laboratory (SciLifeLab) is a national center for molecular biosciences with focus on health and environmental research

scilifelab_epps Public
A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

Python 5 13 0 0 Updated Aug 4, 2022
genomics-status Public
Tornado server for tracking samples at NGI Stockholm

JavaScript 12 MIT 17 0 2 Updated Aug 3, 2022
umi-transfer Public
A Rust software to extract Unique Molecular Identifiers in FastQ files and embedd them into the ID of the corresponding reads.

Rust 0 MIT 0 0 0 Updated Aug 2, 2022
TIDDIT Public
TIDDIT - structural variant calling

Cython 41 8 2 1 Updated Aug 1, 2022
LIMS2DB Public

Python 1 MIT 11 0 0 Updated Jul 19, 2022
TACA Public
Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

Python 12 MIT 20 12 (1 issue needs help) 0 Updated Jul 7, 2022
standalone_scripts Public
Repository to store standalone scripts that do not belong to any bigger package or repository

Python 4 MIT 21 0 1 Updated Jun 20, 2022
genologics_sql Public
Python interface for the Genologics Postgres database.

Python 1 MIT 9 0 0 Updated Jun 17, 2022
statusdb Public
Python wrappers and methods to work with CouchDB's instance at NGI Stockholm

Python 2 MIT 9 0 0 Updated Jun 15, 2022
flowcell_parser Public
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

Python 6 MIT 15 1 0 Updated Jun 15, 2022

Pinned