The Australian e-Health Research Centre

Repositories

• fhir-claml

  Transforms ClaML classifications into FHIR code systems.
  Java 2 9 0 2 Updated Oct 29, 2020

• BitEpi
  C++ 3 2 0 0 Updated Oct 29, 2020

• VariantSpark

  machine learning for genomic variants

  emr aws bioinformatics gwas genome random-forest notebook
  JavaScript 34 92 59 2 Updated Oct 28, 2020

• pathling

  Turn your FHIR data set into a powerful API that can be used to develop analytics applications and augment data science workflow.

  spark analytics standards fhir terminology
  HTML 2 11 28 12 Updated Oct 28, 2020

• primary-care-data-technical
  GLSL 0 2 24 0 Updated Oct 27, 2020

• COVID-sBeacon
  Python 0 0 4 0 Updated Oct 22, 2020

• ontoserver-deploy

  Sample deployment project for Ontoserver
  Dockerfile Apache-2.0 3 9 0 0 Updated Oct 20, 2020

• fhir-tx-transforms

  Transformations of various code systems to FHIR.
  Java 0 0 0 1 Updated Oct 14, 2020

• ontology-core

  Internal model to represent ontologies and utilities to import ontologies from different formats.
  Java Apache-2.0 4 6 0 1 Updated Oct 13, 2020

• snorocket

  The Snorocket Description Logic classifier for EL++ with concrete domains support
  Java Apache-2.0 4 18 4 1 Updated Oct 12, 2020

• terraform-aws-serverless-beacon

  Implementation of Beacon in a serverless (FaaS) manner, to enable cheaper and more versatile (e.g. over distributed ) queries
  Python 0 1 0 0 Updated Oct 9, 2020

• TRIBES

  Finding cryptic relationships to boost disease gene detection

  pipeline vcf ibd-segments estimate-relationships
  Python 3 7 3 1 Updated Sep 25, 2020

• EpiExplorer
  Python 1 2 0 0 Updated Sep 21, 2020

• client-js

  Forked from smart-on-fhir/client-js

  JavaScript client for FHIR
  TypeScript 138 0 0 0 Updated Sep 7, 2020

• LAAT

  A Label Attention Model for ICD Coding from Clinical Text

  label-attention-classification icd-coding clinical-text laat
  Python 1 7 0 0 Updated Sep 4, 2020

• spia-to-fhir

  A Maven plugin for converting terminology from the Standards for Pathology Informatics in Australia (SPIA) into a set of FHIR terminology resources.

  standards fhir terminology pathology
  1 package Java Apache-2.0 2 4 1 1 Updated Aug 19, 2020

• redcap_simple_ontology_provider

  REDCap external module provides simple implementation of the ontology provider mechanism.
  PHP 0 1 2 0 Updated Jul 31, 2020

• COVID-GenomeMap
  CSS 1 1 4 0 Updated Jul 30, 2020

• GWASmetric
  HTML 0 0 0 0 Updated Jul 22, 2020

• material-table

  Forked from mbrn/material-table

  Datatable for React based on material-ui's table with additional features
  JavaScript MIT 803 0 0 0 Updated Jul 15, 2020

• fhir-owl

  Transforms OWL ontologies into FHIR code systems.
  Java 2 7 0 1 Updated Jul 8, 2020

• redcap_pedigree_editor

  Redcap External Module to allow the entry of a pedigree diagram, storing the result as a FHIR resource
  PHP 0 1 0 0 Updated Jun 29, 2020

• open-pedigree

  Forked from phenotips/open-pedigree

  A free and open-source pedigree tool by PhenoTips®
  JavaScript LGPL-2.1 3 0 0 0 Updated Jun 27, 2020

• VariantSpark-aws

  cloudformation template for Variantspark
  HTML 0 0 0 0 Updated Jun 25, 2020

• primary-care-phase2
  GLSL 0 0 0 0 Updated Jun 19, 2020

• tx-analytics-fhir

  An example analytic workflow describing some techniques for working with FHIR and SNOMED CT data.
  Jupyter Notebook CC-BY-4.0 0 1 0 0 Updated Jun 8, 2020

• snomed-ui

  Forked from IHTSDO/snomed-ui-examples

  SNOMED CT User Interface examples
  HTML Apache-2.0 6 0 0 0 Updated May 27, 2020

• hapi-fhir

  Forked from jamesagnew/hapi-fhir

  HAPI FHIR - Java API for HL7 FHIR Clients and Servers
  Java Apache-2.0 912 0 0 0 Updated May 23, 2020

• org.hl7.fhir.core

  Forked from hapifhir/org.hl7.fhir.core
  Java Apache-2.0 53 0 0 0 Updated May 2, 2020

• VariantSpark_Gigascience

  Scripts for the GigaScience publication
  HTML 0 1 0 0 Updated Apr 29, 2020