Snakemake

Repositories

• snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  snakemake reproducibility workflow-management
  Python MIT 177 776 304 25 Updated Dec 19, 2020

• snakemake-wrappers

  This is the development home of the Snakemake wrapper repository, see
  Python 65 75 24 21 Updated Dec 16, 2020

• snakefmt

  The uncompromising Snakemake code formatter

  python formatter fmt bioinformatics snakemake code black
  Python MIT 11 43 3 0 Updated Dec 15, 2020

• snakemake-github-action

  A Github action for running a Snakemake workflow
  Shell MIT 2 14 3 0 Updated Nov 30, 2020

• snakedeploy

  deploy a snakemake pipeline directly from version control (under development)
  Python MPL-2.0 0 0 2 0 Updated Nov 17, 2020

• snakemake-wrapper-utils

  Utility functions and classes shared between Snakemake wrappers
  Python MIT 1 0 0 0 Updated Nov 9, 2020

• snakemake.github.io

  Snakemake homepage
  CSS MIT 1 2 0 0 Updated Oct 15, 2020

• snakemake-tutorial-data

  Example data for the official Snakemake tutorial

  tutorial snakemake reproducibility
  Python 3 1 1 0 Updated Sep 11, 2020

• shournal-to-snakemake
  Python MIT 0 2 0 0 Updated Apr 24, 2020

• snakemake-tutorials

  start of repository with various snakemake tutorials (under development)

  snakemake google-cloud tutorials under-development snakemake-tutorials
  1 4 0 0 Updated Mar 25, 2020