Centers for Disease Control and Prevention

Repositories

• MicrobeTrace

  Forked from AABoyles/MicrobeTrace

  The Visualization Multitool for Molecular Epidemiology and Bioinformatics

  bioinformatics genomics phylogenetic-trees phylogenetics epidemiology network-visualization hiv
  HTML Apache-2.0 20 24 56 0 Updated Aug 27, 2020

• SDP-Vocabulary-Service

  Repository for the SDP Vocabulary Service.
  JavaScript Apache-2.0 2 11 0 0 Updated Aug 27, 2020

• MBAgeneratoR
  Apache-2.0 0 1 0 0 Updated Aug 26, 2020

• ITF_Power_BI

  Contains functions for pulling publicly-available global COVID-19 case and testing data for analysis and populating a Power BI dashboard.

  global-health powerbi viz covid-19
  R Apache-2.0 1 2 0 0 Updated Aug 24, 2020

• TB_molecular_epidemiology

  Algorithms for TB molecular epidemiology analysis
  R Apache-2.0 0 3 0 0 Updated Aug 24, 2020

• geneflow2

  GeneFlow: A Workflow Engine for Bioinformatics and Public Health Analytics

  python workflow bioinformatics
  Python Apache-2.0 0 0 0 0 Updated Aug 19, 2020

• opencdc

  This is the repository for the openCDC web site. Entire site is generated from data files describing CDC Open Technology types for data, api, code, and events. All CDC programs are welcome to submit pull requests with updates and new items useful to the public health open source community.

  jekyll open-source collaboration open-data center-innovation
  HTML Apache-2.0 19 9 0 0 Updated Aug 18, 2020

• BMGAP

  The Bacterial Meningitis Genome Analysis Platform, an analysis pipeline, ExpressJS API, and ReactJS webapp for the analysis and characterization of bacterial meningitis samples
  Python Apache-2.0 0 0 0 5 Updated Aug 13, 2020

• PhysicsTree

  A Radical Alternative to Conventional Phylogenetic Tree Renderers
  HTML Apache-2.0 0 1 0 0 Updated Aug 13, 2020

• LongAdjacency

  A simple, all-client-side web app to transform Adjacency lists into Edge Lists
  HTML Apache-2.0 0 0 0 0 Updated Aug 12, 2020

• phlip
  JavaScript Apache-2.0 0 0 0 1 Updated Aug 11, 2020

• fdns-ui-react

  A collection of reusable React components for quickly building modern and accessible web applications.

  react ui-library fdns
  JavaScript Apache-2.0 3 4 4 4 Updated Aug 7, 2020

• NHSN-SANER
  0 0 0 0 Updated Aug 7, 2020

• covid19healthbot

  This project collects automated screening protocols and self-checker algorithms from organizations implementing CDC screening protocols in interactive web sites, chat bots, and other technology.

  covid-19
  Apache-2.0 17 28 2 0 Updated Aug 5, 2020

• CDC-Maps

  React component for visualizing your data on a map of the United States based off work done for the CDC
  JavaScript Apache-2.0 2 6 0 3 Updated Aug 1, 2020

• DemographySpawnR
  HTML Apache-2.0 2 0 2 0 Updated Jul 30, 2020

• SDP-Jenkins

  Customized Jenkins Docker image for OpenShift using OCP Jenkins S2I builder
  Smarty Apache-2.0 0 0 0 0 Updated Jul 22, 2020

• SARS-CoV-2_Sequencing

  A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
  Perl Apache-2.0 41 195 0 0 Updated Jul 20, 2020

• tn93.js

  Tamura-Nei '93 Computation in Javascript
  JavaScript Apache-2.0 1 3 2 1 Updated Jul 20, 2020

• AlignmentViewer

  A lightweight visualization for genetic sequence alignments
  JavaScript Apache-2.0 0 1 5 1 Updated Jul 20, 2020

• phlip-doc-management
  JavaScript Apache-2.0 0 0 0 3 Updated Jul 20, 2020

• erhms-info-manager
  C# Apache-2.0 0 0 0 0 Updated Jul 17, 2020

• TidyTree

  Uncompromisingly Flexible Phylogenetic Trees in Javascript
  JavaScript Apache-2.0 0 3 10 2 Updated Jul 16, 2020

• patristic

  A Phylogenetics toolkit for Javascript
  HTML Apache-2.0 0 2 4 3 Updated Jul 16, 2020

• template

  Template repository with rules, practices, and privacy, license, records, notices to help programs use the CDCgov GitHub organization.

  boilerplate privacy collaboration practices guidance governance records-management
  Apache-2.0 11 4 0 0 Updated Jul 13, 2020

• NeST

  Forked from shashidhar22/NeST
  Jupyter Notebook 8 0 0 1 Updated Jul 7, 2020

• MaRS

  See Readme
  5 4 1 0 Updated Jul 7, 2020

• VitalConditions
  0 0 0 0 Updated Jun 30, 2020

• openshift-fluentd-forwarder
  Shell Apache-2.0 41 18 3 2 Updated Jun 29, 2020

• cancer-report-validator

  The Cancer Report Validator (CRV) is an interactive tool for validating the content of electronic submissions of cancer-related medical information prior to a system's communication with a public health central cancer registry.

  cancer data-validation informatics hl7 cda cancer-registry clinical-document-architecture
  Java Apache-2.0 2 1 2 3 Updated Jun 18, 2020