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45 public repositories
matching this topic...
A method for variant graph genotyping based on exact alignment of k-mers
The first app for Mobile DNA Sequence Alignment and Analysis
A collection of publications on comparison of high-throughput sequencing technologies.
Updated
Dec 30, 2020
Shell
Fake genomes, fake sequencing, real insights.
Updated
Jul 22, 2021
Julia
Data Structures And Algorithms
Updated
Nov 23, 2019
Python
A package primarily designed for analysing next generation sequencing DNA data from families with pedigree information in order to identify rare variants that are potentially causal of a disease/trait.
Updated
Jun 15, 2018
Python
Classify DNA sequence into Binary class using different Classification algorithms.
Updated
Oct 22, 2019
HTML
This is a script to align DNA sequences and do variant calling. (mtDNA working - poolseq under development)
Updated
Nov 11, 2019
Shell
R-package to analyse and quantify aberrations in DNA-sequencing data
Tools for encoding files to DNA sequence
Tool for generating artificial fastq files which can be used for testing the fidelity of NGS analysis pipelines.
A utility for splitting mixed origin NGS reads with secondary or alt mappings
Updated
Jul 19, 2020
Python
Identification of organisms from a stream of DNA sequences
Fast C code for identifying and removing primers and adapters
Updated
May 25, 2021
JavaScript
This program can detect repeated sequences in DNA.
Updated
May 5, 2020
Jupyter Notebook
DNA Sequence Converter made in Go
Python based script which enables you to translate DNA or RNA, targeted towards high school biology. U=A G=C and exc.
Updated
Nov 24, 2020
Python
Updated
May 30, 2017
Shell
Import a .canter file from neodna, and display the resulting image.
Updated
May 29, 2021
JavaScript
Implementation of random algorithms
Updated
May 3, 2019
Jupyter Notebook
Implementation of LAVA algorithm in Seq language.
Updated
Jan 14, 2021
Python
An error detection algorithm for DNA sequences, written in modern C++
computational analysis for the ATRAID paper
This a repository for WPI BB2950 Molecular Biology B Term 2017
Counts all SNP mutations in .map file
Updated
May 9, 2021
Python
A simple game to teach an unspecialized audience how sequencing techniques work.
Updated
Aug 16, 2017
Java
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It would be nice to have some convenience functions to convert between a
RADdataobject and the input and output ofupdog. This would allow users to take advantage of the file import and export options in polyRAD, while performing the genotype calling itself in updog (more accurate than polyRAD in some cases but much slower).If you would like to add th