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20 public repositories
matching this topic...
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Incremental construction of FM-index for DNA sequences
Succinct Data Structure Library 3.0 (unstable, prerelease)
Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)
Burrows-Wheeler Transform and FM-index in golang
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"
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Updated
Sep 22, 2020
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Python
Wavelet tree based on a fixed block boosting technique
Highly optimized genomic resources for GPUs
Basic seed-and-extend DNA sequence read aligner
Computational Biology Assignments
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Updated
Dec 21, 2017
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Python
Splice-aware Tool for Alignment of Pyrosequencing Reads
bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.
Repository for the master course Genomic IT at the School of Electrical Engineering
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Updated
Apr 22, 2020
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Python
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