MOLGENIS - open source solutions for scientific data

Repositories

• vip

  Variant Interpretation Pipeline
  HTML LGPL-3.0 1 1 10 1 Updated Mar 4, 2021

• molgenis-emx2

  Forked from mswertz/molgenis-emx2

  Beta for EMX2
  Java 3 0 0 5 Updated Mar 3, 2021

• molgenis-ops-helm

  Operations Helm charts to deploy build infrastructure on Kubernetes
  Mustache LGPL-3.0 10 2 10 2 Updated Mar 3, 2021

• GWAS_UMCG_HPC

  This repository holds script to perform genome-wide association studies on the UMCG HPC
  Shell 0 0 0 0 Updated Mar 3, 2021

• molgenis-frontend

  Frontend code for MOLGENIS

  ui vue squash
  JavaScript LGPL-3.0 12 4 107 4 Updated Mar 3, 2021

• molgenis-theme

  Base theme for Molgenis
  SCSS LGPL-3.0 3 0 15 2 Updated Mar 3, 2021

• molgenis

  MOLGENIS - for scientific data: management, exploration, integration and analysis.

  javascript java bioinformatics genetics catalogue freemarker biobank
  Java LGPL-3.0 97 88 285 9 Updated Mar 3, 2021

• easybuild-easyconfigs

  Forked from easybuilders/easybuild-easyconfigs

  A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
  Python GPL-2.0 485 2 0 2 Updated Mar 3, 2021

• NGS_RNA
  Shell LGPL-3.0 6 2 1 1 Updated Mar 3, 2021

• molgenis-service-armadillo

  Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite
  Java 4 3 0 0 Updated Mar 3, 2021

• NGS_Automated
  Shell LGPL-3.0 7 3 12 0 Updated Mar 3, 2021

• molgenis-app-biobank-explorer

  Vue application for the biobank explorer; A card detail view on BBMRI biobank - collection data
  JavaScript LGPL-3.0 16 1 9 4 Updated Mar 2, 2021

• data-transform-vkgl
  Java 2 0 10 1 Updated Mar 1, 2021

• docker

  Dockerfiles and docker-compose for MOLGENIS
  Dockerfile LGPL-3.0 14 2 3 0 Updated Feb 26, 2021

• molgenis-ui-form

  Library for generating HTML web forms
  JavaScript LGPL-3.0 9 0 19 (1 issue needs help) 13 Updated Feb 24, 2021

• molgenis-go-nl
  HTML 0 0 0 0 Updated Feb 24, 2021

• molgenis-projects

  Repository containing settings, configuration files, and public data for different MOLGENIS project servers
  CSS LGPL-3.0 11 0 4 3 Updated Feb 22, 2021

• ngs-utils

  Collection of notes and scripts related to NGS
  Perl LGPL-3.0 23 11 2 1 Updated Feb 19, 2021

• molgenis-js-auth

  Simple UI to manage user registrations and roles in Fusion Auth
  JavaScript 3 0 0 0 Updated Feb 19, 2021

• NGS_CNV

  CNV calling pipelines based on NGS data
  GPL-3.0 1 0 0 1 Updated Feb 18, 2021

• molgenis-app-genenetwork
  JavaScript MIT 5 1 5 7 Updated Feb 18, 2021

• vibe-suppl

  Variant Interpretation using Biological Evidence - supplemental files
  R LGPL-3.0 3 0 0 0 Updated Feb 16, 2021

• ansible-pipelines
  Python GPL-3.0 5 7 0 0 Updated Feb 16, 2021

• NGS_DNA

  NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
  Shell LGPL-3.0 15 10 17 2 Updated Feb 12, 2021

• molgenis-app-pipeline-dashboard

  A MOLGENIS 'Track & Trace' dashboard for analysis pipelines
  TypeScript LGPL-3.0 3 1 0 10 Updated Feb 11, 2021

• molgenis-js-i18n

  Library for internationalization of MOLGENIS JavaScript applications
  JavaScript LGPL-3.0 5 0 0 5 Updated Feb 11, 2021

• molgenis-tools-commander

  A command line interface for MOLGENIS

  hacktoberfest
  Python LGPL-3.0 8 8 12 1 Updated Feb 11, 2021

• vip-report

  Report generator for Variant Call Format (VCF) files
  Java LGPL-3.0 0 2 6 0 Updated Feb 10, 2021

• vip-report-template

  Report template for Variant Call Format (VCF) Report generator
  TypeScript LGPL-3.0 0 2 21 0 Updated Feb 10, 2021

• VaSeBuilder

  Validation Set Builder
  Python LGPL-3.0 3 1 8 1 Updated Feb 9, 2021