Here are
381 public repositories
matching this topic...
Official git repository for Biopython (originally converted from CVS)
Updated
Aug 10, 2020
Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Updated
Jul 24, 2020
Python
Official code repository for GATK versions 4 and up
Updated
Aug 13, 2020
Java
Data intensive science for everyone.
Updated
Aug 13, 2020
Python
tools for working with genome variation graphs
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Updated
Dec 31, 2019
Python
Python and C++ code for reading and writing genomics data.
16,432 Free Yara rules created by
Efficient pythonic random access to fasta subsequences
Updated
Aug 6, 2020
Python
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
Updated
May 27, 2020
Julia
A Java API for high-throughput sequencing data (HTS) formats.
Updated
Aug 13, 2020
Java
De novo assembly from Oxford Nanopore reads.
UGENE is free open-source cross-platform bioinformatics software
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Updated
Aug 18, 2019
Python
A collection of scripts and notes related to genomics and bioinformatics
A fast 23andMe DNA parser and inferrer for Python
Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
Double stranded DNA & simulation of homologous recombination, Gibson assembly, cut&paste cloning in Python and Jupyter notebooks
Updated
Apr 22, 2020
Jupyter Notebook
tools for genetic genealogy and the analysis of consumer DNA test results
Updated
Jul 14, 2020
Python
A fast 23andMe genome text file parser, now superseded by arv
Updated
Nov 12, 2017
Python
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Updated
Jun 15, 2020
Jupyter Notebook
Updated
Apr 23, 2020
Java
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
Visualizing DNA Sequences via Javascript
Updated
Feb 3, 2020
JavaScript
A package for designing compact and comprehensive capture probe sets.
Updated
Jun 12, 2020
Python
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
Analysis pipelines for sequencing data
Updated
Aug 12, 2020
Shell
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.
Updated
Mar 16, 2020
JavaScript
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Updated
Jan 14, 2020
JavaScript
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