DataBiosphere / toil

4 Pull requests merged by 2 people

• Fix None check when parsing WDL JSON file

  #3272 merged Oct 15, 2020

• Add transpose() WDL function

  #3273 merged Oct 14, 2020

• Add kube_watch_enabled into documentation

  #3267 merged Oct 14, 2020

• Add WDL builtin test 'size'.

  #3255 merged Oct 12, 2020

2 Pull requests opened by 2 people

• Added doubleMem functionality for lsf jobs that die due to reaching imposed memory limit

  #3276 opened Oct 15, 2020

• Add WDL builtin test 'range'.

  #3277 opened Oct 16, 2020

3 Issues closed by 2 people

• Kubernetes batch system doesn't provide Docker for CWL workflows that use Docker

  #3223 closed Oct 16, 2020

• transpose() implemented for WDL.

  #3197 closed Oct 14, 2020

• size() implemented for WDL.

  #3166 closed Oct 12, 2020

7 Issues opened by 6 people

• Test to see how good our caching is on CWL.

  #3278 opened Oct 16, 2020

• Intermittent Failure Test in GitLab

  #3275 opened Oct 14, 2020

• Debug message about not enough cores is super annoying

  #3274 opened Oct 14, 2020

• Write change logs

  #3271 opened Oct 12, 2020

• Update architecture document so that it's intern-friendly

  #3270 opened Oct 12, 2020

• Double Mem functionality with batch schedulers toil-cwl-runner

  #3269 opened Oct 12, 2020

• CWL workflow failed with the message: Job file does not exist (yet)

  #3268 opened Oct 11, 2020

7 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• Job Concept Unification

  #3250 commented on Oct 17, 2020 • 20 new comments

• How to run toil-cwl-runner on a local HPC with the torque batch system?

  #3254 commented on Oct 13, 2020 • 5 new comments

• CWLGather - still RuntimeError: This job was passed a promise that wasn't yet resolved when it ran.

  #2236 commented on Oct 12, 2020 • 3 new comments

• Make promises indexable with more path components to fix #1695

  #3262 commented on Oct 12, 2020 • 1 new comment

• Write review checklist and add to contributor doc

  #3265 commented on Oct 12, 2020 • 0 new comments

• file store read/write open function should probably allow binary/encode for PY3

  #2918 commented on Oct 16, 2020 • 0 new comments

• "Name" tag on leader instance not being set (possibly similar to #2574)

  #2828 commented on Oct 16, 2020 • 0 new comments