Code for design of diagnostic PCR primers, and metabarcoding markers.
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Dec 23, 2020 - Python
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primer-design
Here are 33 public repositories matching this topic...
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
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Sep 20, 2019 - R
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Sep 17, 2020 - Python
Webapp for design DNA primers for miRNA qPCR process
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Apr 18, 2017 - CSS
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
bioinformatics
toolbox
bioconductor
dcc
circular-rna
primer-design
computational-rna-biology
rbp
fuchs
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Aug 17, 2020 - Python
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
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Jan 11, 2021 - Python
all-in-one solution for discovering novel DNA barcode
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Jan 8, 2021 - Python
PrimerServer2: a high-throughput primer design and specificity-checking platform
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Jan 14, 2021 - Python
Obsolete!! Begin to turn to PrimerServer2
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Jul 22, 2019 - Perl
In-silico PCR and variant primer design
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Jun 24, 2020 - C++
Use GitHub to facilitate automation, collaboration and reproducibility in your machine learning workflows.
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Dec 4, 2020 - JavaScript
Modeling of primers/probes hybridization on to a set of target viral sequences.
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May 8, 2020 - C++
primer design pipeline
coverage
environment
bioinformatics
entropy
graph
jar
position
primer-design
nucleotide-sequences
primerdesign
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Apr 9, 2020 - Java
Web App, CLI, and API for designing cloning primer pairs - written in Go👩🏼🔬👨🏼🔬
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Feb 13, 2019 - Go
In-silico PCR amplification on complete genomes
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Dec 11, 2020 - JavaScript
PrimerDriver - Automated design of mutagenic PCR primers
react
python
cli
django
command-line
reactjs
web-application
polymerase-chain-reaction
primer-design
mutagenic-pcr-primers
site-directed-mutagenesis
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Jan 5, 2021 - JavaScript
a molecular solutions toolbox for molecular biologists.
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Dec 5, 2020 - Python
R package for designing miRNA primers.
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May 20, 2019 - R
Support for rapid design of primers for amino acid exchanges and saturation mutagenesis by Golden Gate cloning.
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Aug 28, 2020 - R
Tool in Perl for finding Polymorphisms in primers for human genes.
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Dec 26, 2018 - Perl
De novo microsatellite loci identification pipeline as used in Cavanaugh et al. (submitted)
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Feb 20, 2020 - Perl
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Nov 29, 2018 - Python
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
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Dec 17, 2018 - C
SUTD 2020 10.007 Modelling the Systems World 1D Project
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Jun 6, 2020 - Python
Design PCR primers around chromosomal targets using Primer3. SNPs and ambiguous alignments are removed.
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Oct 26, 2016 - Java
Alignment of biological sequences and primer designing
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Oct 11, 2018
Variant Primer Design
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Jun 20, 2018 - Python
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Jan 25, 2018 - R
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