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picard

Here are 27 public repositories matching this topic...

Borewit / music-metadata

Sponsor Star

Stream and file based music metadata parser for node. Supporting a wide range of audio and tag formats.

Updated Aug 13, 2021
TypeScript

Hoohm / dropSeqPipe

Star

A SingleCell RNASeq pre-processing snakemake workflow

yaml picard snakemake pipeline plot conda multiqc star umi reference-genome drop-seq dropseq scrbseq scrb-seq dropseqtools

Updated Feb 28, 2021
R

picard-plugins

metabrainz / picard-plugins

Sponsor Star

Picard plugins: use 1.0 branch for Picard < 2.0 (python 2/Qt4) and 2.0 branch for Picard >= 2.0 (python 3/Qt5)

python picard musicbrainz musicbrainz-picard

Updated Aug 6, 2021
Python

Borewit / musicbrainz-api

Sponsor Star

slowkow / picardmetrics

Star

🚦 Run Picard on BAM files and collate 90 metrics into one file.

picard bam-files bioinformatics quality-control rna-seq

Updated Sep 27, 2017
Shell

PicardBarcodeScanner

phw / PicardBarcodeScanner

Sponsor Star

Use your Android phone to load releases in MusicBrainz Picard.

android music java picard musicbrainz audio-applications musicbrainz-picard

Updated Aug 7, 2021
Kotlin

hashhar / picard-beets-config

Star

MusicBrainz Picard tagger scripts, config and beets config

music picard beets musicbrainz musicbrainz-picard beets-configuration

Updated Apr 13, 2020
Shell

weisslj / picardplugins

Star

Plugins for MusicBrainz Picard

python picard plugins musicbrainz musicbrainz-picard

Updated Apr 30, 2017
Python

phw / picard

Sponsor Star

MusicBrainz Picard (personal development fork)

python picard musicbrainz audio-applications tagger

Updated Aug 6, 2021
Python

TRON-Bioinformatics / tronflow-bam-preprocessing

Star

Nextflow pipeline for the preprocessing of BAM files based on GATK best practices. Marking duplicates, realignment around indels, base quality score recalibration (BQSR) and reporting of metrics are optional to maintain flexibility for different use cases.

picard nextflow gatk

Updated Jun 24, 2021
Nextflow

jaivalis / music-archiver

Star

picard music-hoarding

Updated Jun 7, 2020
Python

GoodforGod / ConcurrentPicardELC

Star

Picard ELC Library for concurrent DNA computing. Performance proposals.

java picard concurrency dna-sequences elc

Updated Jun 9, 2017
Java

musicbrainz-picard-snap

phw / musicbrainz-picard-snap

Sponsor Star

Code for snapping MusicBrainz Picard.

picard snap musicbrainz snapcraft musicbrainz-picard

Updated Jul 21, 2021
Shell

Nucleomics-VIB / admin-tools

Star

sysadmin tasks made easier

picard gatk samtools filesender-cmd

Updated Aug 9, 2021
Shell

khandaud15 / RNA-Seq-Variant-Calling

Star

Snakemake based workflow for calling Variants on RNA-Seq data in a joint calling mode

python picard rna-seq snakemake variant-calling gatk4

Updated Jul 30, 2020
Python

modupeore / VAP

Star

VAP : For Reference mapping and Variant detection.

picard bioinformatics snps pipeline gatk variants star hisat2 bwa bowtie tophat2

Updated Feb 28, 2020
Perl

PavlidisLab / rnaseq-variant-pipeline

Star

Pipeline for calling and analyzing variants from RNA-Seq data

picard rnaseq star luigi-workflows variant-calling gatk4 rnaseq-pipeline

Updated Aug 26, 2020
Python

metabrainz / picard-plugin-tools

Sponsor Star

Tools to manage picard plugins

package picard tools plugins

Updated Aug 29, 2017
Python

phw / musicbrainz-magic-tagger-button

Sponsor Star

Browser user script to automatically enable the green tagger button on musicbrainz.org

javascript picard userscript musicbrainz musicbrainz-picard

Updated Jul 21, 2021
JavaScript

livingsilver94 / deezerart

Star

Fetch music album covers from Deezer using MusicBrainz Picard.

plugin picard cover-art tagging-albums

Updated Dec 4, 2020
Python

TheRoddyWMS / BamToFastqPlugin

Star

This Roddy plugin contains a basic bam to fastq workflow using Picard and Samtools.

workflow picard bam-files bam fastq biobambam2 roddy

Updated Nov 18, 2020
Shell

dfmgr / picard

Star

picard configs

dotfiles picard configuration-files dotfiles-installer

Updated Aug 11, 2021
Shell

AnuragAnalog / Numerical-Analysis

Star

This repo contains some of the well-known algorithms for Numerical Analysis.

Updated Aug 8, 2021
C

rohitner / MA20102

Star

Numerical Solution of Ordinary and Partial Differential Equation : A 3 credit course at IITKGP

picard numerical-methods runge-kutta numerical-solver forward-euler backward-euler

Updated May 29, 2018
Mathematica

samkatakouzinos / picard-scripting

Star

My settings for MusicBrainz Picard music tagger

picard musicbrainz

Updated Oct 14, 2016

adiamb / EXOME_1000G_WF

Star

picard gatk slurm-cluster exome-sequencing-analysis scg4

Updated Jun 26, 2018
Shell

gambalab / dropseq

Star

Pipeline to process DROP-seq data

picard dropseq single-cell-rna-seq single-cell-analysis dropseqtools star-algorithm

Updated May 25, 2021
Java

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