Cytoscape Consortium

Repositories

• cytoscape.js

  Graph theory (network) library for visualisation and analysis

  javascript analysis network visualisation graph-theory cytoscapejs
  JavaScript 1,297 6,974 7 1 Updated Oct 15, 2020

• cy-community-detection

  Community Detection App for Cytoscape
  Java BSD-3-Clause 1 2 9 0 Updated Oct 15, 2020

• cytoscape-impl

  Cytoscape 3 implementation bundles.
  Java LGPL-2.1 34 27 0 0 Updated Oct 14, 2020

• cytoscape-api

  Cytoscape 3 API bundles.
  Java LGPL-2.1 25 17 0 1 Updated Oct 13, 2020

• legend-creator

  Cytoscape3 app to create legends as annotations
  Java 0 1 4 1 Updated Oct 13, 2020

• network-merge

  Core App: Network Merge
  Java LGPL-2.1 1 0 0 3 Updated Oct 13, 2020

• communitydetection-rest-server

  Community Detection REST Service
  Java BSD-3-Clause 1 0 0 2 Updated Oct 13, 2020

• ndexsearch-rest
  Java 1 0 0 2 Updated Oct 13, 2020

• ndex-enrichment-rest
  Java 2 1 0 2 Updated Oct 13, 2020

• analyzer

  Stripped down version of Network Analyzer core app
  Java 0 0 2 1 Updated Oct 13, 2020

• opencl-cycl
  Java 1 0 0 3 Updated Oct 13, 2020

• sbml

  Core App: SBML Reader
  Java 0 1 0 1 Updated Oct 13, 2020

• cy-ndex-2

  A Cytoscape client app for the NDEx database
  Java MIT 1 0 21 2 Updated Oct 13, 2020

• psi-mi

  Core App: PSI-MI support
  Java LGPL-2.1 0 0 0 1 Updated Oct 13, 2020

• cytoscape-automation

  Collection of scripts that include programmatic io and control of Cytoscape
  HTML CC0-1.0 46 52 10 6 Updated Oct 13, 2020

• webservice-psicquic-client

  Core App: PSICQUIC Client
  Java 1 0 2 1 Updated Oct 13, 2020

• webservice-biomart-client

  Core App: BioMart Client
  Java LGPL-2.1 0 0 0 1 Updated Oct 13, 2020

• biopax

  Core App: BioPAX support
  Java LGPL-2.1 2 3 1 1 Updated Oct 13, 2020

• copycat-layout

  Map the locations of nodes (and the network view) from one network to another. Easily compare networks side by side by positioning the views similarly.
  Jupyter Notebook 1 2 1 1 Updated Oct 13, 2020

• cytoscape-gui-distribution

  Cytoscape 3 desktop version.
  Java 12 12 0 1 Updated Oct 12, 2020

• diffusion

  A Cytoscape app to interface with the heat diffusion service
  Java 2 2 15 2 Updated Oct 12, 2020

• cytoscape-admin-scripts

  Build and maintenance scripts for Cytoscape core developers.
  Jupyter Notebook 2 1 1 0 Updated Oct 12, 2020

• cxio

  CX serialization and de-serialization
  Java 0 2 1 2 Updated Oct 12, 2020

• cx

  CX serialization and de-serialization in Cytoscape
  Java 0 1 8 2 Updated Oct 12, 2020

• json

  Core App: JSON support
  Java 1 0 0 2 Updated Oct 12, 2020

• cytoscape-explore
  JavaScript MIT 0 5 14 0 Updated Oct 9, 2020

• cytoscape.js-cxtmenu

  Context menu for Cytoscape.js

  cytoscapejs cytoscapejs-extension
  JavaScript MIT 66 106 1 1 Updated Oct 9, 2020

• cyBrowser
  Java 2 0 2 0 Updated Oct 9, 2020

• py4cytoscape

  Python library for calling Cytoscape Automation via CyREST

  python workflow cytoscape workflow-automation py2cytoscape cytoscape-interfaces
  Python 4 5 1 0 Updated Oct 7, 2020

• cx-viz-converter
  JavaScript MIT 0 0 0 0 Updated Oct 7, 2020