2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)

Unpivoted and cleaned data sets on the COVID-19 pandemic

Infectious Disease Sequencing Platform

VAPiD: Viral Annotation and Identification Pipeline

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

Reconstruction and analysis of viral and host genomes at multi-organ level

A software to detect virome-wide integrations

genetic distance plotting for recombination events analysis

Corona Virus 3D

Papers discussed on various shows on MicrobeTV

Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>

🔬 A Ruby library for carefully refactoring critical paths.

Circular particle counter for electron microscope images

Can viral infections change the hormonal levels?

NGS data analysis scripts for HBV elimination research group

A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)

BioMight - Human Biological Animation Engine

Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)

ELISA Software 2.0

workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.

Here, I stored various scripts relevant to the study of sapovirus evolution. The scripts are relevant to (1) the mining of inter-genotype evolution, (2) within and between-host sapovirus genome evolution, (3) sapovirus genetic diversity.

NGS data analysis scripts for HBV elimination research group