adapter quality bioinformatics quality-control filter ngs sequencing overlap splitting duplication umi trimming overlapping preprocessing filtering illumina fastq merging qc polyg

genomics genome variant-calling bam genome-sequencing illumina fastq genome-assembly variant-annotations viral-ngs viral

science workflow bioinformatics nanopore genomics sequencing vcf dna fasta gtf illumina fastq fast5

nanopore pacbio hybrid illumina genome-assembler

bioinformatics rna-seq pipeline genomics analysis sequencing dna atac-seq wgs illumina wes wgbs rrbs nyu

bioinformatics illumina demultiplexing experiment-manager samplesheet

count gene r human rstats bioconductor rnaseq deseq2 illumina exon junction derfinder annotation-agnostic recount

workflow virus pipeline nextflow assembly metagenomics variant-calling illumina amplicon viral nf-core covid-19 covid19 sars-cov-2

split sequencing index illumina fastq demultiplexing demux dual-index

quality-control genomics sequencing illumina

bioinformatics simulation ngs illumina

nanopore pacbio scaffolding illumina genome-assembly hybrid-genome-assembly alignment-free-algorithm

bioinformatics nanopore genomics sequencing pacbio awesome-list genome-sequencing illumina sequence-alignment dna-sequencing

transcript ion illumina salmon gencode

rust bioinformatics genomics next-generation-sequencing illumina fastq fastq-files

genomics genome ngs plants pacbio illumina genome-assembly read-mapping ont nanopore-sequencing genome-size-estimation

bioinformatics sequencing illumina genotype adme pgrnseq cyp2d6 allele

snakemake analysis metagenomics illumina metagenomics-data

bioinformatics illumina demultiplexing

array methylation illumina hg19 hm450k biological-age patient-aging aging-mechanisms

bash bioinformatics rna-seq genomics ngs gene-expression bioinformatics-pipeline alignment star quantification transcriptomics illumina rsem ngs-analysis fastqc spliced-alignment stringtie splice-aware

genome assembly mda single-cell illumina genomes sag

microservice vcf irods illumina samtools

nanopore genomics simulation next-generation-sequencing pacbio transcriptomics illumina structural-variation

bioinformatics microbiome illumina 16s microbiota phyloseq dada2 lefse picrust2

bam-files bioinformatics htslib illumina

bioinformatics pipeline webserver illumina amplicon-sequencing amplicon-pipeline

bioinformatics lims ngs illumina clarity genologics basespace

python bash quality-control r pipeline assembly metagenomics illumina functional-annotation

count gene r human rstats bioconductor rnaseq deseq2 illumina exon junction derfinder annotation-agnostic recount