Skip to content
#

sbml-model

Star

Here are 12 public repositories matching this topic...

Language: All
Filter by language
All 12 Python 3 Java 2 Jupyter Notebook 2 C++ 1 HTML 1 Julia 1 Shell 1
Sort: Best match
Sort options
Best match Most stars Fewest stars Most forks Fewest forks Recently updated Least recently updated

opencobra / cobrapy

Star 318
Open

cobra.test.create_test_model("salmonella") results in incorrect exchange reaction names

5
jeremymchacon
jeremymchacon commented Aug 25, 2020

Hello maintainers of the amazing package,

I recently updated cobrapy and am experienced unexpected behavior with cobra.test.create_test_model("salmonella")

Two things are unusual:

  1. Now, many warnings are given during loading of the model, whereas none were given in a previous version. Here are a few of the warnings:

`Model does not contain SBML fbc package information.
SBML package

Read more
SBML help-wanted good first issue
Find more good first issues

draeger-lab / SBSCL

Star 17

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

java api library simulation solver linear-programming simulations ordinary-differential-equations numerical-simulations ode-solver steady-state sbml flux-balance-analysis time-series-analysis constraint-based-modeling fba sbml-model systems-biology-simulation
  • Updated Jan 5, 2022
  • HTML

Improve this page

Add a description, image, and links to the sbml-model topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the sbml-model topic, visit your repo's landing page and select "manage topics."

Learn more