-
Updated
Oct 14, 2020 - C++
#
fastq
Here are 158 public repositories matching this topic...
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
adapter
quality
bioinformatics
quality-control
filter
ngs
sequencing
overlap
splitting
duplication
umi
trimming
overlapping
preprocessing
filtering
illumina
fastq
merging
qc
polyg
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
-
Updated
Dec 6, 2020 - Go
Versatile open-source tool for microbiome analysis
search
bioinformatics
clustering
metagenomics
chimera
fasta
microbiome
fastq
metabarcoding
amplicon
sequence-alignment
-
Updated
Nov 17, 2020 - C++
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
bioinformatics
quality-control
ngs
sequencing
overlap
error
trimming
filtering
fastq
qc
adapter-trimming
-
Updated
May 14, 2020 - Python
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
-
Updated
Nov 29, 2020 - R
Viral genomics analysis pipelines
genomics
genome
variant-calling
bam
genome-sequencing
illumina
fastq
genome-assembly
variant-annotations
viral-ngs
viral
-
Updated
Nov 3, 2020 - Python
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
gene
compression
nanopore
sam
pacbio
compress
bam
fastq
genomic-data-compression
compression-rate
fastq-compression
gtx
-
Updated
Dec 15, 2020
An efficient FASTQ manipulation suite
-
Updated
Jan 27, 2020 - C
Detect and visualize target mutations by scanning FastQ files directly
-
Updated
Jan 21, 2020 - C
unode
commented
Feb 28, 2019
When working with very large SAM files it is often convenient to remove sequence and quality information to reduce storage and improve I/O.
Following from this it would be convenient to have a stripSeqQual function that replaces the two fields with *.
Simple FASTQ quality assessment using Python
-
Updated
Dec 14, 2020 - Python
FastQC port to Qt5: A quality control tool for high throughput sequence data.
-
Updated
Aug 4, 2020 - C++
public-health
report
variant-calling
bacteria
fastq
phylogenomics
denovo-assembly
genotyping
resistome
virulome
-
Updated
Aug 3, 2020 - Perl
My bioinfo toolbox
-
Updated
Nov 2, 2020 - Python
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
-
Updated
Oct 13, 2020 - C
Randomly subsample sequencing reads to a specified coverage
-
Updated
Oct 14, 2020 - Rust
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
bioinformatics
genome
taxonomy
metagenomics
classification
fasta
fastq
metagenomes
dna-sequences
short-read-mapper
read-mapping
metagenomic-analysis
metagenomic-classification
genomic-data-analysis
bioinformatics-algorithms
long-reads
metagenomic-data
refseq
ncbi-refseq
bioinformatics-tool
-
Updated
Mar 31, 2020 - C++
Parse and process FASTA and FASTQ formatted files of biological sequences.
parsing
julia
bio
file-format
fasta
fastq-format
fastq
fastq-files
fasta-format
biojulia
fasta-files
-
Updated
Nov 15, 2020 - Julia
Ultra-fast Multi-threaded FASTQ Demultiplexing
-
Updated
Jul 28, 2018 - C
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI).
java
data-structures
fastq
deduplication
string-search
string-similarity
hamming
unique-molecular-identifiers
-
Updated
Oct 29, 2020 - Java
-
Updated
Mar 21, 2020 - Rust
Simulate metagenomic short reads from one or more populations.
-
Updated
Jun 7, 2020 - Python
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
validation
ngs
sequencing
scrna-seq
umi
single-cell
fastq
high-throughput-sequencing
barcodes
10x
drop-seq
fastq-files
dge
umi-count
fastq-filterpair
digital-gene-expression
fastq-validation
-
Updated
Jul 27, 2020 - C
Improve this page
Add a description, image, and links to the fastq topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the fastq topic, visit your repo's landing page and select "manage topics."
Code: