#

sequencing

Here are 271 public repositories matching this topic...

OTTO-project / OTTO

Star

Open

Sampler Graphics

3

jmidt commented Aug 19, 2019

We need some good graphics for the main sampler screen. This is where you can do rudimentary editing of the samples that are played in the sequencer.
There are two screens. The main screen with the controls:

Volume (this one may be changed later)
Speed (Playspeed. The sample also pitches up or down)
Filter (in the middle the sound is unchanged, away from center it engages either hi-pass

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good first issue graphics

Open

UI templates

8

Open

Implement a DIRECT FORM I biquad filter in Gamma

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google / deepvariant

Star

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

science machine-learning bioinformatics deep-learning genomics genome tensorflow ngs sequencing dna deep-neural-network deepvariant

Updated Dec 14, 2020
Python

broadinstitute / gatk

Star

Official code repository for GATK versions 4 and up

java science bioinformatics spark genomics genome cluster ngs sequencing gatk-jar dna gatk

Updated Dec 21, 2020
Java

OpenGene / fastp

Star

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Updated Oct 14, 2020
C++

galaxyproject / galaxy

Star

Data intensive science for everyone.

docker science workflow bioinformatics pipeline genomics workflow-engine ngs sequencing dna usegalaxy hacktoberfest

Updated Dec 22, 2020
Python

hemberg-lab / scRNA.seq.course

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Analysis of single cell RNA-seq data course

r course sequencing bookdown scrna-seq scrna-seq-analysis

Updated Dec 11, 2020
TeX

47degrees / fetch

Star

Simple & Efficient data access for Scala and Scala.js

cats data monads scala concurrency sequencing parallelism scala-js monix data-fetching

Updated Dec 21, 2020
Scala

brentp / mosdepth

Sponsor Star

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

coverage nim genome sequencing depth wgs hacktoberfest exome nim-lang

Updated Nov 20, 2020
Nim

samtools / htsjdk

Star

A Java API for high-throughput sequencing data (HTS) formats.

java genomics gradle intellij jar ngs sequencing oracle sam vcf dna java-api fasta bam failure cram htsjdk

Updated Dec 21, 2020
Java

ideoforms / isobar

Star

A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.

music midi composition sequencing algorithmic-composition

Updated Nov 3, 2020
Python

wurmlab / sequenceserver

Star

Open

bed or gff

yannickwurm commented Nov 19, 2020

We should enable a slightly-modified table output format that is gff or bed-like and can thus be more easily read into IGV

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good first issue

Open

Mixed sequence type notification should be sticky

Open

Improve IP/hostname detection on EC2

6

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chanzuckerberg / shasta

Star

De novo assembly from Oxford Nanopore reads.

nanopore assembly sequencing dna long-read pacbio de-novo

Updated Dec 21, 2020
C++

r3fang / SnapATAC

Star

Analysis Pipeline for Single Cell ATAC-seq

machine-learning-algorithms sequencing epigenetics bioinformatics-pipeline single-cell-analysis single-cell-atac-seq

Updated Sep 24, 2020
R

OpenGene / AfterQC

Star

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

bioinformatics quality-control ngs sequencing overlap error trimming filtering fastq qc adapter-trimming

Updated May 14, 2020
Python

sanger-pathogens / Roary

Star

Rapid large-scale prokaryote pan genome analysis

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Sep 26, 2020
Perl

twbattaglia / RNAseq-workflow

Star

A repository for setting up a RNAseq workflow

science workflow bioinformatics rna-seq pipeline sequencing genes

Updated Apr 10, 2017
R

biocommons / hgvs

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Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

bioinformatics genomics sequencing

Updated Dec 17, 2020
Python

sanger-pathogens / Artemis

Star

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Oct 13, 2020
Java

sanger-pathogens / snp-sites

Star

Finds SNP sites from a multi-FASTA alignment file

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Dec 16, 2020
C

sanger-pathogens / circlator

Star

A tool to circularize genome assemblies

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Oct 28, 2020
Python

ugene

ugeneunipro / ugene

Star

UGENE is free open-source cross-platform bioinformatics software

science workflow bioinformatics cross-platform pipeline cpp ngs sequencing qt5 dna msa ugene

Updated Dec 22, 2020
C++

genomics

igordot / genomics

Star

A collection of scripts and notes related to genomics and bioinformatics

science workflow bioinformatics nanopore genomics sequencing vcf dna fasta gtf illumina fastq fast5

Updated Sep 14, 2020
R

cLoops

YaqiangCao / cLoops

Star

Accurate and flexible loops calling tool for 3D genomic data.

Updated Dec 8, 2020
Python

sanger-pathogens / ariba

Star

Antimicrobial Resistance Identification By Assembly

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Dec 1, 2020
Python

zya / beet.js

Star

Polyrhythmic Sequencer library for Web Audio API.

audio music library js sequencing webaudio webaudio-api

Updated Aug 1, 2020
JavaScript

tobiasrausch / alfred

Star

BAM Statistics, Feature Counting and Annotation

alfred quality quality-control sequencing read-counts insert-size coverage-distribution alignment-metrics feature-counting

Updated Oct 26, 2020
C++

truvari

spiralgenetics / truvari

Star

Structural variant toolkit for VCFs

benchmarking bioinformatics sequencing vcf structural-variation giab-report

Updated Dec 14, 2020
Python

mlin / GenomicSQLite

Star

Genomics Extension for SQLite

bioinformatics genomics sqlite sequencing sqlite3

Updated Dec 21, 2020
C++

robertaboukhalil / fastq.bio

Star

An interactive web tool for quality control of DNA sequencing data

bioinformatics genomics sequencing webassembly wasm fastqc

Updated Oct 25, 2020
Svelte

mercury

tmhglnd / mercury

Star

A minimal and human-readable language and environment for the live coding of algorithmic electronic music.

language performance osc creative-coding sequencing live-coding livecoding visuals mercury algorithmic-composition sounds mercury-environment human-readable-language

Updated Dec 14, 2020
Max

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