snp

WebGL-based protein structure viewer

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development Version)

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

Data management of large-scale whole-genome sequence variant calls (Development Version)

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

A set of scripts for calculating pairwise SNP distance

R package – HLA Genotype Imputation with Attribute Bagging (development, unstable version)

An interactive graphical illustration of genetic associations and their biological context

vSNP -- validate SNPs

R package for RIVER (RNA-Informed Variant Effect on Regulation)

R package for pedigree inference based on SNP data

A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines

Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)

SNP abundance correlates with network degree

Your genome report

Collecting Genotypes from ENA and make their SNPs

The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow

Predictive marker discovery for groups; binary data, genomic data (single nucleotide variants), arbitrary character data.

A QC pipeline for SVs calls based on coverage and SNP calls

Count common and unique SNPs among several populations from a VCF format file.

Tool for genome wide association studies with Bayesian inference and statistical learning

Polymorphic Edge Detection - An efficient polymorphism detector for NGS data

Calculates Additive and Dominance Relationship Matrices

Warehousing DbSNP's JSON Data into PostgreSQL

pipeline for mutant gene candidate discovery

Galaxy For Life Science - SNiPlay

ld-tools: toolkit for linkage disequilibrium calculation designed to work locally

GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.