Population-scale genotyping using pangenome graphs
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Updated
Jul 29, 2021 - C++
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genotype
Here are 52 public repositories matching this topic...
Rare variant test software for next generation sequencing data
c-plus-plus
gwas
kernel
genetics
ngs
next-generation-sequencing
variants
meta-analysis
genotype
umich
skat
association-analysis
rare-variant
vcf-files
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Apr 24, 2021 - C++
Bayesian genotyper for structural variants
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Mar 6, 2021 - Python
tools for genetic genealogy and the analysis of consumer DNA test results
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Jun 22, 2021 - Python
Support Vector Structural Variation Genotyper
machine-learning
bioinformatics
genotype
structural-variation
genotyping-by-sequencing
de-novo-mutation
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May 29, 2020 - Python
mgatk: mitochondrial genome analysis toolkit
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Updated
Aug 31, 2021 - Python
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
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May 5, 2021 - Python
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
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Apr 5, 2019 - Python
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
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Updated
Nov 17, 2020 - C++
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
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Updated
Jun 17, 2021 - Python
Framework for Interpretable Neural Networks
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Updated
Aug 25, 2021 - Jupyter Notebook
Efficient compression and retrieve of genotype data with integer sparse matrices
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Updated
Aug 18, 2021 - R
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Updated
Mar 7, 2021 - Forth
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
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Sep 1, 2021 - Python
A simple python library to identify the most likely strain from the population
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Jun 8, 2021 - Python
Collecting Genotypes from ENA and make their SNPs
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Nov 15, 2020 - Python
A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT
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Aug 30, 2021 - Jupyter Notebook
Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
inversion
ngs
insertion
snp
polymorphism
k-mer
sequence-alignments
variant
somatic-mutations
genotype
deletion
ngstools
alignment-free-algorithm
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Aug 30, 2021 - Perl
Routine processing for genotype data towards ADMIXTURE and/or imputation
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Apr 8, 2018 - Python
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
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Aug 13, 2021 - C
Analysis of genotype data from 23andMe DNA testing.
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Nov 8, 2018 - R
summarize and visualize the genotypes categories per sample in a VCF file
bioinformatics
vcf
variant-calling
genotype
vcftools
genotype-data
bioinformatics-tool
bioinformatics-visualization
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Updated
Jul 11, 2019 - C++
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