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gtf

Here are 38 public repositories matching this topic...

pyGeno

tariqdaouda / pyGeno

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Updated Sep 16, 2021
Python

NBISweden / AGAT

Another Gtf/Gff Analysis Toolkit

toolkit perl-scripts gtf gff agat standardisation gff-format

Updated Nov 24, 2022
Perl

genomics

igordot / genomics

A collection of scripts and notes related to genomics and bioinformatics

science workflow bioinformatics nanopore genomics sequencing vcf dna fasta gtf illumina fastq fast5

Updated Sep 13, 2022
R

pbenner / gonetics

Go / Golang Bioinformatics Library

golang coverage bam-files bioinformatics bigwig chip-seq golang-library gtf bigwig-files bioinformatics-containers genomic-ranges

Updated Aug 16, 2021
Go

sagnikbanerjee15 / Finder

A fully automated gene annotator from RNA-Seq expression data

bioinformatics rna-seq finder bioinformatics-pipeline genome-annotation protein-sequences gtf gene-models transcripts gene-annotations changepoint-detection predict-genes gene-annotation-pipeline

Updated Aug 11, 2022
Python

sbslee / fuc

Sponsor

Frequently used commands in bioinformatics

visualization api cli bioinformatics sam vcf fasta gtf bed maf bam fastq cram gff

Updated Aug 23, 2022
Python

dputhier / pygtftk

A python package and a set of shell commands to handle GTF files

bioinformatics gene rna-seq genomics cds ngs tts transcript bigwig chip-seq gtf bed exon tss dna-sequences genomic intron splicing

Updated Apr 29, 2022
Python

tjparnell / biotoolbox

Tools for querying and analysis of genomic data

bioinformatics rna-seq gff3 annotations vcf fasta bigwig chip-seq bioperl gtf bam

Updated Nov 30, 2022
Perl

BioInterchange / Ontologies

Home of the Genomic Feature and Variation Ontology (GFVO)

genomics gff3 ontology vcf gtf gvf genomic-data-science

Updated Mar 13, 2021
Ruby

zyxue / gtf2csv

Convert genome annotation GTF file into plain CSV format

csv annotation genomics gtf annotation-processing gff

Updated Oct 3, 2018
Jupyter Notebook

chasewnelson / EBT

Evolutionary Bioinformatics Toolkit (EBT)

perl vcf fasta gtf sequence dna-sequences sequence-alignment fasta-sequences gff vcf-files

Updated Jul 14, 2020
Perl

bioinformatist / py3_scripts

Life is short, *****.

crawler scrapy pacbio blast gtf

Updated Jan 9, 2017
Python

jacobbierstedt / gfftobed

Convert GFF3/GTF to BED

genome gff3 annotations genome-annotation gtf bed gff3-files bed-format gtf-format gff3-format gff3-to-bed

Updated May 21, 2021
C++

Bohdan-Khomtchouk / gtf

R package to provide gene transfer format files from commonly investigated model organisms in ChIP-seq studies

bioinformatics computational-biology chip-seq gtf r-package

Updated Jul 17, 2017
R

guokai8 / gff2gene

Plot gene structure

gff3 structure gtf figure

Updated Aug 25, 2021
R

deeptools / deeptools_intervals

A python library for constructing interval trees with associated exon/annotation information

bioinformatics interval-tree gtf bed

Updated Aug 7, 2019
C

danilotat / UTR_add_extend_GTF

Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.

bioinformatics rna-seq ensembl gtf differential-expression 3-rna-seq

Updated Dec 27, 2020
Python

PoisonAlien / gtfsanta

Tookit for gtf format conversion and sequence extraction

Updated Apr 17, 2017
Julia

dmyersturnbull / bioio

Micro-libraries for reading and writing genomic sequence data in various formats.

bioinformatics genomics genome gff3 ngs next-generation-sequencing vcf genbank fasta gtf bed ucsc gvf

Updated Dec 5, 2022
Java

nthomasCUBE / Gexplora

Gexplora - user-interface to analyse genomic elements along chromosomes

python annotation numpy heatmap ensembl tkinter gtf linechart oma chromosomes stringdb cis-element

Updated Nov 15, 2020
Python

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