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@maxplanck-ie

Max Planck Institute of Immunobiology and Epigenetics

Popular repositories

  1. Customizable workflows based on snakemake and python for the analysis of NGS data

    Python 273 66

  2. parkour Public

    An open-source Laboratory Information Management System (LIMS) for Next-Generation Sequencing (NGS)

    JavaScript 34 17

  3. Software to assemble contigs/scaffolds into chromosomes using Hi-C data

    Python 23 3

  4. Rna-seq pipeline, From FASTQ to differential expression analysis...

    Python 18 10

  5. A snakemake pipeline for 10X genomics cellranger

    Python 12 1

  6. "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.

    Python 9 2

Repositories

  • snakepipes Public

    Customizable workflows based on snakemake and python for the analysis of NGS data

    Python 273 MIT 66 20 3 Updated Feb 1, 2022
  • ATACofthesnake Public

    Differential accessibility calculation for bulk-ATAC seq.

    Python 2 MIT 0 2 0 Updated Jan 24, 2022
  • parkour Public

    An open-source Laboratory Information Management System (LIMS) for Next-Generation Sequencing (NGS)

    JavaScript 34 GPL-3.0 17 11 1 Updated Dec 8, 2021
  • TRAP Public

    tools and utilities for annotating DNA sequences

    Perl 1 GPL-3.0 1 0 1 Updated Nov 30, 2021
  • bulkRNAseq_MPI_shiny_app Public

    Takes feature counts output and plots heatmaps and barplots for selected genes.

    HTML 0 0 0 0 Updated Nov 19, 2021
  • 10X_snakepipe Public

    A snakemake pipeline for 10X genomics cellranger

    Python 12 1 0 0 Updated Aug 20, 2021
  • BigRedButton Public

    1. Push button 2. Get results 3. Publish

    Python 0 0 4 0 Updated Aug 19, 2021
  • TheWhoTheWhatTheHuh Public

    "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.

    Python 9 2 2 0 Updated Aug 17, 2021
  • snakequest Public

    A shiny app that collects user input required for running snakepipes.

    R 2 0 2 0 Updated Jun 16, 2021
  • Genes2Functions Public

    This is a shiny app built around clusterProfiler to perform functional enrichment analysis from RNA-Seq DE analysis

    HTML 0 0 1 0 Updated Jun 15, 2021

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