NCBI - National Center for Biotechnology Information/NLM/NIH

Repositories

• sra-tools

  SRA Tools
  C 159 501 55 4 Updated Jan 23, 2021

• ncbi-vdb

  ncbi-vdb
  C 30 69 8 0 Updated Jan 22, 2021

• ncbi-logging

  Log monitoring and gathering infrastructure to feed analytics
  C++ 5 3 0 0 Updated Jan 22, 2021

• pgap

  NCBI Prokaryotic Genome Annotation Pipeline
  Common Workflow Language 46 122 10 0 Updated Jan 22, 2021

• cwl-ngs-workflows-cbb

  A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

  ngs ngs-analysis ngs-pipeline cwl-workflow
  Common Workflow Language 4 16 0 0 Updated Jan 21, 2021

• ngs

  NGS Language Bindings
  C++ 50 110 8 1 Updated Jan 21, 2021

• TPMCalculator

  TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

  rna-seq ngs tpm
  C++ 22 74 10 (1 issue needs help) 0 Updated Jan 19, 2021

• BAMscale

  BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
  C 11 47 0 2 Updated Jan 19, 2021

• docker
  C++ 26 30 0 1 Updated Jan 19, 2021

• cxx-toolkit
  HTML 35 13 0 0 Updated Jan 19, 2021

• vadr

  Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
  Perl 11 23 7 1 Updated Jan 18, 2021

• ngs-tools
  C++ 21 60 9 2 Updated Jan 14, 2021

• icn3d

  WebGL-based protein structure viewer

  delphi webgl jupyter-notebook chemical protein snp nucleotide
  JavaScript 26 62 0 0 Updated Jan 14, 2021

• ncbi-drs

  GA4GH DRS Service
  Python 7 0 4 1 Updated Jan 13, 2021

• R0_Unstratified_Case_Data

  R0 calculated by regime regression
  Python Unlicense 0 0 0 0 Updated Jan 13, 2021

• ribovore
  Perl 0 1 0 0 Updated Jan 13, 2021

• osiris

  OSIRIS is a public domain quality assurance software package that facilitates the assessment of multiplex short tandem repeat (STR) DNA profiles based on laboratory-specific protocols. OSIRIS evaluates the raw electrophoresis data contained in .fsa or .hid files using an independently derived mathematically-based sizing algorithm. OSIRIS current…
  C++ 22 16 0 0 Updated Jan 11, 2021

• elastic-blast-docs

  ElasticBLAST documentation
  3 0 0 0 Updated Jan 11, 2021

• Sequence-similar-fold-switchers

  Code and data for predicting mutation-induced protein fold switching
  Perl 4 0 0 0 Updated Jan 9, 2021

• blast_plus_docs
  10 41 3 2 Updated Jan 8, 2021

• SKESA

  SKESA assembler
  C++ 9 58 7 1 Updated Jan 8, 2021

• dbvar

  dbVar

  structural variation dbvar
  11 33 6 0 Updated Jan 8, 2021

• bert_gt
  Python 0 0 0 0 Updated Jan 8, 2021

• data-repository-service-schemas

  Forked from ga4gh/data-repository-service-schemas

  A repository for the schemas used for the Data Repository Service.
  Python Apache-2.0 38 0 0 2 Updated Jan 7, 2021

• ncbi-vdb3
  6 1 0 0 Updated Jan 7, 2021

• amr

  amr_finder
  C++ 14 59 3 0 Updated Jan 7, 2021

• datasets

  NCBI Datasets is an experimental resource for finding and building datasets
  12 47 2 0 Updated Jan 6, 2021

• ncbi_doc_template
  HTML 3 0 0 0 Updated Dec 31, 2020

• rapt

  Read Assembly and Annotation Pipeline Tool

  ngs genome-annotation pgap annotation-pipeline skesa
  10 22 3 0 Updated Dec 30, 2020

• pm4ngs-chipexo
  Jupyter Notebook 3 1 0 0 Updated Dec 28, 2020