Skip to content

/ htsjdk

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

240 Open 293 Closed
240 Open 293 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels.
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀
Update the javadoc published on samtools.github.io
#1518 opened Nov 9, 2020 by cmnbroad
Fix race condition that arrises in SAMRecordDuplicateComparator
#1516 opened Oct 13, 2020 by fleharty
@fleharty
New release?
#1515 opened Oct 12, 2020 by sjaenick
Improve error message "An index is required, but none found"
#1512 opened Sep 23, 2020 by juhawilppu
2
VCF output with invalid QUAL values based on Locale
#1510 opened Sep 14, 2020 by dennishendriksen
1
Exception is thrown when loading the BAM from a URL
#1507 opened Sep 2, 2020 by SergejN
7
VCF file ID field separated by semi-colon
#1506 opened Sep 1, 2020 by BoscoSuen
1
1
Extended Attributes in Genotype not parsed
#1502 opened Aug 21, 2020 by BoscoSuen
1
Unnecessary IllegalStateException "no sequences were added to the reference" in FastaReferenceWriter
#1498 opened Aug 11, 2020 by d-cameron
1
AbstractLocusIterator uses a ArrayList but uses it like a queue optimization
#1490 opened Jul 1, 2020 by yfarjoun
We got a grant to improve Htsjdk!
#1482 opened May 27, 2020 by lbergelson
5
HTSJDK should not accept non-two-character header tags bug
#1477 opened May 4, 2020 by jmarshall
3
htsjdk.samtools.SAMException sequence name doesn't match regex
#1471 opened Apr 8, 2020 by kviljoen
5
Expose option for memory mapping with private MEMORY
#1470 opened Apr 7, 2020 by lbergelson
7
CRAM huffman codeword is limited to 32 bits cram
#1465 opened Mar 17, 2020 by cmnbroad
CRAM 2.1 test files have incorrect container block byte sizes cram
#1452 opened Jan 17, 2020 by cmnbroad
MarkDuplicates will prefer a longer read over a proper read in some cases
#1438 opened Nov 25, 2019 by RyanBio
7
Slice MD5 check allows accepts an MD5 match for a partial slice span cram
#1426 opened Oct 15, 2019 by cmnbroad
@cmnbroad
2
SamIndexes methods present CSIs as BAIs
#1425 opened Oct 9, 2019 by cmnbroad
Inefficient random access patterns cram
#1424 opened Oct 8, 2019 by jkbonfield
3
Need to support complex rearrangements in SV (VCF)
#1423 opened Oct 7, 2019 by yfarjoun
2
Possible core dumps due to Intel's gkl
#1420 opened Oct 2, 2019 by nh13
9
DiskBackedQueue closeIOResources is broken bug
#1414 opened Aug 28, 2019 by biotinker
4
Problem with tribble "has index" logic
#1405 opened Aug 1, 2019 by jrobinso
7
IntervalList not sorted?
#1402 opened Jul 30, 2019 by al-dunstan
2
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.
You can’t perform that action at this time.