Data Biosphere

Repositories

• azul

  Metadata indexer and query service used for HCA and CGP

  hca prod
  Python Apache-2.0 3 14 282 28 Updated Mar 19, 2021

• jade-data-repo-cli

  Command Line Interface for interacting with the Jade Data Repository
  Java BSD-3-Clause 0 0 0 10 Updated Mar 19, 2021

• duos-ui

  Broad Institute Data Use Oversight System
  JavaScript 1 4 0 7 Updated Mar 19, 2021

• toil

  A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

  python aws workflow pipeline slurm mesos common-workflow-language
  Python Apache-2.0 203 733 294 15 Updated Mar 19, 2021

• jade-data-repo

  The repo for the terra data repository built by the jade team.
  Java BSD-3-Clause 5 7 0 15 Updated Mar 19, 2021

• FHIR

  Broad FHIR is a FHIR Server that powers applications for Genomics research.

  fhir
  JavaScript MIT 0 2 0 2 Updated Mar 19, 2021

• leonardo

  Notebook service
  Scala 14 21 0 13 Updated Mar 19, 2021

• terra-resource-buffer

  Terra Resource Buffering Service
  Java BSD-3-Clause 2 2 0 4 Updated Mar 18, 2021

• terra-docker
  Python BSD-3-Clause 17 7 6 5 Updated Mar 18, 2021

• hca-metadata-api

  A library for processing HCA metadata programmatically
  Python MIT 0 1 9 0 Updated Mar 18, 2021

• terra-cli
  Java 0 0 0 1 Updated Mar 18, 2021

• terra-workspace-manager
  Java BSD-3-Clause 3 5 0 4 Updated Mar 18, 2021

• terra-ui

  Web user interface for the Terra platform
  JavaScript BSD-3-Clause 11 27 145 11 Updated Mar 18, 2021

• dog-aging-ingest

  Batch ETL pipeline to mirror Dog Aging Project data into the Jade Data Repository.
  Scala BSD-3-Clause 0 0 0 3 Updated Mar 18, 2021

• dsub

  Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
  Python Apache-2.0 35 180 41 0 Updated Mar 18, 2021

• bdcat-integration-tests

  This supports integration testing between components for the biodata catalyst grant.
  Python MIT 0 1 5 0 Updated Mar 18, 2021

• jade-data-repo-ui

  UI for the Jade Data Repo
  JavaScript BSD-3-Clause 1 2 0 4 Updated Mar 18, 2021

• consent

  Broad Institute Data Use Oversight System
  Java BSD-3-Clause 2 4 0 0 Updated Mar 18, 2021

• hca-ingest
  Python BSD-3-Clause 1 3 0 2 Updated Mar 18, 2021

• consent-ontology

  Broad Institute Data Use Oversight System
  Java BSD-3-Clause 0 6 0 0 Updated Mar 18, 2021

• saturn-ui-prod-deploy

  Terra UI automated prod deploy service
  JavaScript 0 1 0 1 Updated Mar 18, 2021

• terra-common-lib
  Java BSD-3-Clause 0 0 0 5 Updated Mar 18, 2021

• terra-cloud-resource-lib
  Java BSD-3-Clause 1 2 0 2 Updated Mar 18, 2021

• terra-interoperability-model

  Common data model proposal for biomedical research intended to facilitate and encourage data sharing and reuse
  HTML BSD-3-Clause 0 8 1 0 Updated Mar 17, 2021

• terra
  0 0 0 0 Updated Mar 16, 2021

• clinvar-ingest

  Batch ETL pipeline to mirror ClinVar releases into the Jade Data Repository.
  Scala BSD-3-Clause 0 2 0 0 Updated Mar 15, 2021

• terra-resource-janitor

  Janitor service to cleanup resources created by Cloud Resource Library (CRL)
  Java BSD-3-Clause 0 0 0 1 Updated Mar 12, 2021

• stairway

  Stairway saga transaction processor library
  Java BSD-3-Clause 0 2 0 0 Updated Mar 11, 2021

• encode-ingest

  Batch ETL pipeline to mirror ENCODE data into the Jade Data Repository.
  Scala BSD-3-Clause 0 2 0 1 Updated Mar 1, 2021

• hca-import-validation

  A utility to validate a staging area before it is imported.
  Python Apache-2.0 0 0 2 1 Updated Feb 26, 2021