Repositories
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TheBookOfOhdsi
The Book of OHDSI repository
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ShinyDeploy
Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.
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Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
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WebAPI
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
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Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
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ClinicalTrialsWGETL
[under development] ETL materials to support proposal for CDM enhancements for clinical trial data
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OHDSIonAWS
Automation code and documentation for standing up the OHDSI toolstack in an AWS environment
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Usagi
Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.
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SkeletonPredictionStudy
A skeleton package to use as a template for studies developing prediction models
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ETL-LambdaBuilder
CDM Builder leveraging AWS Lambda
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WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
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Vocabulary-v5.0
PALLAS: Build process for OMOP Standardized Vocabularies. Currently not available as independent release. Therefore, do not clone or try to replicate. It is work in progress and not ready for replication.
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SqlRender
This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
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Hades
Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.
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AthenaUI
UI of web application for distributing and browsing the Standardized Vocabularies for the OMOP CDM
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CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
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CdmDdlBase
An R package for generating the documentation and DDL (Data Definition Language) for the Common Data Model in various SQL dialects
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PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
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SelfControlledCohort
An R package for performing self-controlled cohort analyses, a method to estimate risk by comparing time exposed with time unexposed among the exposed cohort.
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EvidenceSynthesis
An R package for combining evidence from multiple sources (e.g. multiple data sites)
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DataQualityDashboard
A tool to help improve data quality standards in observational data science.
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CirceR
R package wrapper for CIRCE
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ArachneNodeAPI
Arachne Data Node is a component that facilitates connection and communication between local databases and Arachne Central
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Broadsea-Shiny
A Docker container based on rocker/shiny with added java jdk and additional R packages.
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webapi-wiki
WebAPI Wiki Content
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CohortMethod
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
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MIMIC
MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
