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docking

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NicoRenaud
NicoRenaud commented Oct 27, 2020

The function _get_relevance of NeuralNet (that is called at each epoch) is really slow and takes up to a few hours on cartesius when training on 001-003 of BM5. In comparison the training during the epoch takes about 2 hours .This is due to the fact that for each molecule we open the hdf5, read the irmsd and close the hdf5. We could instead preload the irmsd during the data preprocessing when

lightdock

RxDock is a fork of rDock. Note: the latest code is under development. Please do git checkout c0c3a3a after clone if you want patched rDock. [IMPORTANT NOTE: pull requests should be posted on GitLab, this is a read-only source code mirror]

  • Updated Jul 21, 2021
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