Galaxy Project

Repositories

• galaxy-hub

  Galaxy Community Hub

  community documentation home homepage hub usegalaxy
  Pug 160 46 42 (1 issue needs help) 0 Updated May 3, 2021

• tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  tools usegalaxy hacktoberfest toolshed wrappers iuc
  HTML MIT 281 104 198 (4 issues need help) 140 Updated May 2, 2021

• galaxy-language-server

  Galaxy language server to help in Galaxy (https://galaxyproject.org/) tool wrappers development (work in progress).
  Python Apache-2.0 3 12 7 (1 issue needs help) 0 Updated May 2, 2021

• galaxy

  Data intensive science for everyone.

  docker science workflow bioinformatics pipeline genomics workflow-engine
  Python 677 832 1,464 (130 issues need help) 153 Updated May 2, 2021

• training-material

  A collection of Galaxy-related training material

  training tutorial materials ngs metagenomics rnaseq proteomics
  HTML MIT 475 197 114 34 Updated May 2, 2021

• iwc

  Intergalactic Workflow Commission
  10 10 12 3 Updated May 2, 2021

• bioblend

  A Python library for interacting with Galaxy and CloudMan APIs

  api api-client usegalaxy cloudman hacktoberfest
  Python MIT 97 73 34 7 Updated May 1, 2021

• planemo

  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

  cli sdk click usegalaxy hacktoberfest commonwl
  Python 68 65 240 (14 issues need help) 13 Updated May 1, 2021

• ansible-galaxy-extras

  Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
  HTML 38 11 18 9 Updated Apr 30, 2021

• usegalaxy-tools

  usegalaxy.* common tools
  Shell 23 7 8 8 Updated Apr 30, 2021

• SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  usegalaxy 2019-ncov coronavirus covid covid19 covid-2019
  Jupyter Notebook MIT 76 121 7 4 Updated Apr 30, 2021

• gxadmin

  Handy command line utility for Galaxy administrators 🚀

  automation sql sysadmin galaxy galaxy-project postgres-databases
  Shell GPL-3.0 14 13 8 (2 issues need help) 2 Updated Apr 30, 2021

• infrastructure-playbook

  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
  Jinja MIT 10 6 5 5 Updated Apr 28, 2021

• usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  python ansible playbook usegalaxy
  Shell AFL-3.0 16 22 99 (1 issue needs help) 2 Updated Apr 28, 2021

• ansible-galaxy

  An Ansible role for managing a Galaxy server
  Jinja 61 42 16 5 Updated Apr 28, 2021

• ansible-galaxy-os

  An Ansible role is for configuring the base operating system useful for running Galaxy.
  MIT 16 3 1 3 Updated Apr 29, 2021

• galaxy-helm

  Minimal setup required to run Galaxy under Kubernetes
  Python MIT 31 22 12 5 Updated Apr 27, 2021

• planemo-ci-action

  Test, deploy, or lint changed Galaxy tools or workflows using Planemo.
  Shell MIT 3 3 4 2 Updated Apr 27, 2021

• ansible-galaxy-tools

  An Ansible role for automated installation of tools from a Tool Shed into Galaxy.

  ansible-role
  Python MIT 33 14 15 2 Updated Apr 23, 2021

• galaxykubeman-helm

  Helm chart for Galaxy KubeMan used for deploying Galaxy alongside its dependencies (NFS, CVMFS, and CloudMan)
  Shell MIT 3 0 0 1 Updated Apr 21, 2021

• cloudlaunch-registry

  An application registry for CloudLaunch
  2 1 0 1 Updated Apr 20, 2021

• cargo-port

  cache packages permanently
  Python MIT 33 11 6 1 Updated Apr 20, 2021

• gxformat2

  Galaxy Workflow Format 2
  Python 4 4 8 6 Updated Apr 19, 2021

• galaxy-flavor-testing

  Travis scripts to unify and ease the testing of Galaxy favors
  Makefile MIT 5 6 2 0 Updated Apr 19, 2021

• ephemeris

  Library for managing Galaxy plugins - tools, index data, and workflows.
  Python 31 20 20 (2 issues need help) 7 Updated Apr 16, 2021

• galaxy-docker-k8s

  An Ansible playbook for building a Galaxy container for Kubernetes.
  HTML MIT 9 5 1 1 Updated Apr 16, 2021

• pulsar

  Distributed job execution application built for Galaxy
  Python Apache-2.0 36 32 54 (5 issues need help) 5 Updated Apr 15, 2021

• cloudman

  Easily create and manage compute clusters on any Cloud.

  usegalaxy cloudman hacktoberfest
  Python 22 33 4 (1 issue needs help) 1 Updated Apr 14, 2021

• ansible-repos
  2 0 0 1 Updated Apr 8, 2021

• admin-training

  Galaxy Admin Training

  training nginx ansible development admin tools cluster
  Shell 60 54 12 0 Updated Apr 8, 2021