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neuroscience

Here are 980 public repositories matching this topic...

mne-tools / mne-python

Star

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

visualization python machine-learning statistics neuroscience meg eeg neuroimaging electroencephalography magnetoencephalography electrocorticography ecog

Updated May 4, 2021
Python

psychopy / psychopy

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For running psychology and neuroscience experiments

python science experiment neuroscience linguistics psychology psychophysics psycholinguistics experiment-control psychopy experimental-design

Updated May 4, 2021
Python

analyticalmonk / awesome-neuroscience

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A curated list of awesome neuroscience libraries, software and any content related to the domain.

python list intelligence awesome mooc matlab neuroscience awesome-list brain hacktoberfest

Updated Apr 15, 2021

nengo / nengo

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A Python library for creating and simulating large-scale brain models

python neuroscience neural-networks nengo

Updated Apr 16, 2021
Python

brian-team / brian2

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Brian is a free, open source simulator for spiking neural networks.

python science biological-simulations neuroscience computational-neuroscience simulation-framework code-generation spiking-neural-networks differential-equations brian brian2

Updated May 4, 2021
Python

fieldtrip / fieldtrip

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The MATLAB toolbox for MEG, EEG and iEEG analysis

statistics analysis matlab neuroscience meg eeg connectivity neuroimaging bids brain beamformer fieldtrip ecog dipole time-frequency ieeg seeg donders

Updated May 4, 2021
MATLAB

rordenlab / dcm2niix

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dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

research jpeg dicom neuroscience mri neuroimaging nifti-format mri-images dicom-images nifti jpeg-image dcm nii gz nitrc bids-format dcm2niix mricrogl

Updated Apr 26, 2021
C++

csinva.github.io

csinva / csinva.github.io

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Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.

Updated Apr 24, 2021
HTML

eyeloop

simonarvin / eyeloop

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EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.

visual neuroscience psychology eye-tracking video-oculography neurology senses

Updated Feb 16, 2021
Python

neuropsychology / NeuroKit.py

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A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

Updated Mar 30, 2020
Python

pyRiemann / pyRiemann

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Python package for covariance matrices manipulation and Biosignal classification with application in Brain Computer interface

python machine-learning neuroscience eeg bci brain-computer-interface covariance-matrices

Updated May 1, 2021
Python

asoplata / open-computational-neuroscience-resources

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A publicly-editable collection of open computational neuroscience resources

awesome computational-biology neuroscience computational-neuroscience open-science awesome-list brain neuroimaging-data neuroscience-methods neuroscience-data neural-simulators electrophysiological-data neuron-models neural-simulations simulation-neuroscience

Updated Mar 4, 2021

eselkin / awesome-computational-neuroscience

Star

Open

Add departments for Stanford

eselkin commented Jul 27, 2019

Add departments column and values for PIs at Stanford University

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good first issue

Open

Add department for Caltech

Open

Add departments to University of Waterloo

wmayner / pyphi

Sponsor Star

A toolbox for integrated information theory.

modeling information neuroscience causality integrated-information causation

Updated Apr 3, 2021
Python

brainiak / brainiak

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Open

Ignore downloaded example data in Git

3

mihaic commented Dec 7, 2018

Some is already in .gitignore, but some is not. We should check all examples.

Read more

easy good first issue help wanted low priority

Open

searchlight: Return value docstrings missing

Open

hyperparamopt: Move normal distribution computation to a more general module

BlueBrain / Brayns

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Visualizer for large-scale and interactive ray-tracing of neurons

Updated May 4, 2021
C++

moabb

NeuroTechX / moabb

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Mother of All BCI Benchmarks

machine-learning neuroscience eeg bci brain-computer-interface bci-benchmarks

Updated Apr 8, 2021
Python

ReproNim / neurodocker

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Generate custom Docker and Singularity images, and minimize existing containers

linux docker science dockerfile reproducible-research containers neuroscience singularity-container nipype

Updated Apr 19, 2021
Python

neurotech-berkeley / neurotech-course

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CS198-96: Intro to Neurotechnology @ UC Berkeley

neuroscience eeg eeg-signals emg neurofeedback event-related-potentials neurotech biosignals

Updated Apr 1, 2021
Jupyter Notebook

neurolib-dev / neurolib

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Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

neuroscience computational-neuroscience neural-networks brain-network neuroscience-methods mean-field-theory brain-simulations brain-modeling

Updated Apr 19, 2021
Python

brainrender

brainglobe / brainrender

Star

Open

GUI - Improvements

FedeClaudi commented Feb 24, 2021

Listing some improvements to the GUI functionality that contributors might be interested in collaborating on.

Simple

Adding Volume actors from .npy files
When adding cells, let users select if the want a Points or PointsDensity actor
More optional arguments for CLI (e.g. shader, background color etc)

Intermediate

general code clean up / UI improvments

Advanced

Read more

GUI enhancement good first issue help wanted

Open

BUG - not rendering human atlas properly, but mouse atlas works fine

4

Open

Render volumetric heatmaps on top of brain structures

11

AllenInstitute / bmtk

Star

Brain Modeling Toolkit

python simulation modeling neuroscience neural-networks neuroinformatics neuron

Updated Apr 21, 2021
Python

brainflow

brainflow-dev / brainflow

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Open

use github actions artifacts instead AWS S3 to store files

Andrey1994 opened Mar 13, 2021

chore good first issue

Open

Create Conan package

1

Open

add support for mingw\cygwin compilation

Find more good first issues →

open-cogsci / OpenSesame

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Graphical experiment builder for the social sciences

python research neuroscience psychology methods social-sciences opensesame

Updated Apr 7, 2021
Python

janelia-flyem / dvid

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Distributed, Versioned, Image-oriented Dataservice

go big-data key-value neuroscience image-storage connectomics http-service dataservice

Updated Apr 24, 2021
Go

EtienneCmb / visbrain

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A multi-purpose GPU-accelerated open-source suite for brain data visualization

visualization python gui opengl gpu plot neuroscience connectivity sleep brain vispy mni deep-sources

Updated Feb 17, 2021
Python

curiositry / EEGrunt

Star

A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse

python tutorial graph neuroscience data-visualization eeg openbci ecg muse data-analysis collection-python-eeg

Updated Jun 19, 2017
Python

lucklab / erplab

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ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.

erp matlab neuroscience csd cognitive-science electroencephalography eeg-data eeglab erp-data eeglab-toolbox erplab event-related-potentials

Updated May 4, 2021
MATLAB

fooof-tools / fooof

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Parameterizing neural power spectra into periodic & aperiodic components.

neuroscience meg eeg electrophysiology power-spectral-density ecog oscillations lfp local-field-potential

Updated Apr 29, 2021
Python

MouseLand / suite2p

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cell detection in calcium imaging recordings

neuroscience data-analysis imaging

Updated May 1, 2021
Jupyter Notebook

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