The Blue Brain Project

Repositories

• nexus

  Blue Brain Nexus - A knowledge graph for data-driven science

  scala nexus provenance knowledge-graph shacl
  17 packages Scala Apache-2.0 46 175 227 5 Updated May 12, 2021

• CoreNeuron

  Simulator optimized for large scale neural network simulations.

  neural-network hpc neuroscience simulation-framework neuron supercomputing compartmental
  C++ BSD-3-Clause 33 79 65 (1 issue needs help) 7 Updated May 12, 2021

• nexus-web

  Nexus Web is the interface of Blue Brain Nexus

  react redux nodejs javascript typescript nexus storybook
  TypeScript 2 8 0 13 Updated May 12, 2021

• Brayns

  Visualizer for large-scale and interactive ray-tracing of neurons

  python cloud async interactive websockets visualisation neuroscience
  C++ 40 239 14 2 Updated May 12, 2021

• hpc-coding-conventions
  CMake 2 7 15 2 Updated May 12, 2021

• spack

  Forked from spack/spack

  A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
  Python 1,267 7 2 (1 issue needs help) 30 Updated May 12, 2021

• nmodl

  Code Generation Framework For NEURON MODeling Language

  hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
  C++ 10 26 122 (18 issues need help) 4 Updated May 11, 2021

• libsonatareport
  C++ 0 0 0 0 Updated May 11, 2021

• nexus-forge

  Building and Using Knowledge Graphs made easy

  data-science rdf knowledge-graph json-ld data-management shacl knowledge-engineering
  Python 8 15 14 1 Updated May 11, 2021

• BlueGraph

  Python framework for graph analytics and co-occurrence analysis

  graphs neo4j-database networkx property-graph graph-analytics graph-framework graph-embedding
  Python Apache-2.0 0 4 5 2 Updated May 11, 2021

• BluePyEfe

  BluePyEfe: Blue Brain Python E-feature extraction
  Python 8 6 0 0 Updated May 11, 2021

• NeuroM

  Neuronal Morphology Analysis Tool

  python morphologies neurons
  AGS Script BSD-3-Clause 41 68 15 4 Updated May 11, 2021

• MorphIO

  A python and C++ library for reading and writing neuronal morphologies

  python morphology neurons neuron glia mitochondria reticulum
  C++ LGPL-3.0 13 17 30 (1 issue needs help) 9 Updated May 11, 2021

• Search

  Blue Brain text mining toolbox for semantic search and structured information extraction

  python nlp machine-learning natural-language-processing text-mining deep-learning
  Python LGPL-3.0 2 9 46 3 Updated May 11, 2021

• Rockets

  REST and websockets C++ library

  javascript python http json typescript cpp json-schema
  C++ 4 25 3 14 Updated May 10, 2021

• nexus-js

  A set of JavaScript libraries built on top of Nexus

  nodejs javascript typescript sdk isomorphic nexus
  TypeScript 3 9 0 6 Updated May 10, 2021

• Brion-wheels
  Shell 2 0 0 1 Updated May 10, 2021

• BluePyOpt

  Blue Brain Python Optimisation Library

  python cross-platform genetic-algorithm biological-simulations neuroscience computational-neuroscience evolutionary-algorithms
  Python 79 150 6 1 Updated May 10, 2021

• Brion

  Blue Brain C++ File IO Library

  synapse
  C++ 20 18 3 0 Updated May 10, 2021

• morph-tool
  AGS Script LGPL-3.0 5 4 2 0 Updated May 7, 2021

• HighFive

  HighFive - Header-only C++ HDF5 interface
  C++ BSL-1.0 92 350 52 (3 issues need help) 0 Updated May 6, 2021

• NeuroMorphoVis

  A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

  morphologies neurons blender-addon neural-modeling mesh-reconstruction soma-reconstruction morphology-analysis
  Python 17 72 33 (3 issues need help) 0 Updated May 5, 2021

• BioExplorer

  The Blue Brain BioExplorer (BBBE) is a tool for scientists to extract and analyze scientific data from visualization and interactive exploration

  science virus raytracing molecular-biology coronavirus covid19
  C++ GPL-3.0 2 8 0 0 Updated May 5, 2021

• NeuroR

  A collection of tools to repair morphologies
  AGS Script LGPL-3.0 2 3 5 0 Updated May 5, 2021

• EMSim

  EMSim is a library that compute different electro-magnetic effects like LPF and VSD.
  C++ LGPL-3.0 1 0 0 0 Updated Apr 28, 2021

• insilico-vsdi
  Python LGPL-3.0 0 0 0 0 Updated Apr 28, 2021

• neuromapp

  The neuromapp library reproduces the algorithms of the main software of the BBP as a collection of mini-apps
  C++ 12 4 2 1 Updated Apr 27, 2021

• homebrew-tap
  Ruby 0 0 0 2 Updated Apr 23, 2021

• neuron_reduce

  Forked from asanin-epfl/neuron_reduce
  AGS Script MIT 4 0 0 0 Updated Apr 23, 2021

• snap

  The Blue Brain Pythonic Simulation and Network Analysis Productivity layer

  analysis simulation modeling
  Python LGPL-3.0 2 9 3 3 Updated Apr 23, 2021