The Blue Brain Project

Repositories

• nexus

  Blue Brain Nexus - A knowledge graph for data-driven science

  scala nexus provenance knowledge-graph shacl
  Scala Apache-2.0 46 185 196 2 Updated Jul 24, 2021

• CoreNeuron

  Simulator optimized for large scale neural network simulations.

  neural-network hpc neuroscience simulation-framework neuron supercomputing compartmental
  C++ BSD-3-Clause 33 86 53 (1 issue needs help) 4 Updated Jul 23, 2021

• nmodl

  Code Generation Framework For NEURON MODeling Language

  hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
  C++ 10 28 126 (15 issues need help) 7 Updated Jul 23, 2021

• nexus-js

  A set of JavaScript libraries built on top of Nexus

  nodejs javascript typescript sdk isomorphic nexus
  TypeScript Apache-2.0 4 10 0 8 Updated Jul 23, 2021

• nexus-web

  Nexus Web is the interface of Blue Brain Nexus

  react redux nodejs javascript typescript nexus storybook
  TypeScript Apache-2.0 3 9 0 6 Updated Jul 23, 2021

• Brayns

  Visualizer for large-scale and interactive ray-tracing of neurons

  python cloud async interactive websockets visualisation neuroscience
  C++ 41 246 14 1 Updated Jul 23, 2021

• mod2c

  Converter for mod files to C code
  C BSD-3-Clause 5 2 4 0 Updated Jul 23, 2021

• spack

  Forked from spack/spack

  A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
  Python 1,376 7 2 (1 issue needs help) 25 Updated Jul 23, 2021

• MorphIO

  A python and C++ library for reading and writing neuronal morphologies

  python morphology neurons neuron glia mitochondria reticulum
  C++ LGPL-3.0 12 18 33 (1 issue needs help) 11 Updated Jul 23, 2021

• Search

  Blue Brain text mining toolbox for semantic search and structured information extraction

  python nlp machine-learning natural-language-processing text-mining deep-learning
  Python LGPL-3.0 2 10 49 5 Updated Jul 23, 2021

• morph-tool
  AGS Script LGPL-3.0 5 5 3 2 Updated Jul 23, 2021

• NeuroR

  A collection of tools to repair morphologies
  Python LGPL-3.0 3 3 4 1 Updated Jul 23, 2021

• HighFive

  HighFive - Header-only C++ HDF5 interface
  C++ BSL-1.0 97 371 49 (4 issues need help) 4 Updated Jul 22, 2021

• luigi-tools

  Extra tools to work with the Luigi library
  Python Apache-2.0 0 2 0 0 Updated Jul 21, 2021

• MOOC-neurons-and-synapses-2017

  Reference data for the "Simulation Neuroscience:Neurons and Synapses" Massive Online Open Course
  Jupyter Notebook 21 33 13 1 Updated Jul 21, 2021

• libsonata

  A python and C++ interface to the SONATA format

  simulation sonata modelling circuit
  C++ LGPL-3.0 10 5 17 (1 issue needs help) 1 Updated Jul 21, 2021

• bsp-usecase-wizard
  Svelte GPL-3.0 0 1 0 0 Updated Jul 20, 2021

• NeuroM

  Neuronal Morphology Analysis Tool

  python morphologies neurons
  AGS Script BSD-3-Clause 43 69 10 4 Updated Jul 20, 2021

• BluePyEfe

  BluePyEfe: Blue Brain Python E-feature extraction
  Python 10 8 0 0 Updated Jul 19, 2021

• nexus-forge

  Building and Using Knowledge Graphs made easy

  data-science rdf knowledge-graph json-ld data-management shacl knowledge-engineering
  Python 9 16 13 1 Updated Jul 19, 2021

• BlueGraph

  Python framework for graph analytics and co-occurrence analysis

  graphs neo4j-database networkx property-graph graph-analytics graph-framework graph-embedding
  Python Apache-2.0 0 6 6 3 Updated Jul 19, 2021

• nexus-schemaorg
  CC-BY-4.0 0 1 0 0 Updated Jul 19, 2021

• bbp-ontologies

  BBP annotated ontologies
  CC-BY-4.0 0 0 0 0 Updated Jul 19, 2021

• nexus-prov

  SHACL shapes for W3C PROV-O

  w3c provenance schemas shacl
  Scala CC-BY-4.0 6 6 2 0 Updated Jul 19, 2021

• nexus-python-sdk

  A Python API to interface with Nexus REST API

  python sdk nexus
  Python Apache-2.0 8 5 10 2 Updated Jul 19, 2021

• metamodeler
  Python GPL-3.0 1 0 0 1 Updated Jul 19, 2021

• neurocurator

  Desktop application (GUI) to perform systematic and collaborative curation of neuroscientific literature.

  python qt neuroscience curation annotation-framework literature-review modeling-parameters
  Python GPL-3.0 2 13 71 1 Updated Jul 19, 2021

• nat

  Python module to use the annotations created with NeuroCurator, for example in a Jupyter notebook.

  python neuroscience curation annotation-framework literature-mining modeling-parameters
  Jupyter Notebook GPL-3.0 3 7 8 1 Updated Jul 19, 2021

• nexus-bbp-domains

  BBP domains specification (schemas, vocabularies)

  schema morphology vocabulary schemas electrophysiology brain-atlas
  Scala CC-BY-4.0 10 8 31 9 Updated Jul 19, 2021

• Search-Graph-Examples

  Blue Brain Search + Blue Brain Graph examples
  Jupyter Notebook BSD-3-Clause 0 0 1 1 Updated Jul 15, 2021