Nadeem Lab @ MSKCC

Integrative Biomedical Data Analysis

SPT Public
Spatial profiling toolbox for spatial characterization of tumor microenvironment in multiplex images

Python 10 1 13 1 Updated Sep 26, 2022
ImPartial Public
Interactive deep learning whole-cell segmentation and thresholding using partial annotations

Jupyter Notebook 14 2 0 1 Updated Sep 20, 2022
DoseRTX Public
Domain knowledge driven 3D radiation dose prediction [PMB'22]

Python 3 1 0 0 Updated Sep 16, 2022
CEP Public
Computational Endoscopy Platform (advanced deep learning toolset for analyzing endoscopy videos) [MICCAI'22, MICCAI'21, ISBI'21, CVPR'20]

Python 41 7 0 0 Updated Sep 14, 2022
Physics-ArX Public
Physics-based data augmentation library for quantifying CT and CBCT images in radiotherapy [PMB'21, Medical Physics'21, AAPM'21]

Python 24 7 0 0 Updated Sep 9, 2022
DeepLIIF Public
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22]

Python 63 30 0 0 Updated Aug 25, 2022
CIR Public
Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]

Python 8 2 0 0 Updated Jul 6, 2022
coincidencetest Public
Exact test for significant feature combination

Python 6 0 0 0 Updated Jun 22, 2022

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