Mahmood Lab @ Harvard/BWH

Repositories

• FISH

  Fast and Scalable Image Search for Histology

  image-retrieval histology pathology image-search-engine histopathology wsi-images mahmoodlab
  Python GPL-3.0 0 5 0 0 Updated Jul 29, 2021

• Patch-GCN

  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

  gcn pathology wsi survival-prediction histopathology wsi-images mahmoodlab
  Python 1 7 1 0 Updated Jul 29, 2021

• CRANE

  Deep Learning-based Assessment of Endomyocardial Biopsies

  histology weakly-supervised-learning pathology whole-slide-imaging biopsy-screening endomyocardial
  Python GPL-3.0 0 3 0 0 Updated Jul 28, 2021

• CLAM

  Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

  weakly-supervised-learning pathology whole-slide-imaging computational-pathology histopathology data-efficient mahmoodlab
  Python GPL-3.0 77 193 0 0 Updated Jul 28, 2021

• PathomicFusion

  Fusing Histology and Genomics via Deep Learning - IEEE TMI

  genomics fusion transcriptomics pathology multimodal histopathology computational-pathogenomics
  Jupyter Notebook GPL-3.0 23 87 0 0 Updated Jul 26, 2021

• HistoFL

  Federated Learning for Computational Pathology

  pathology federated-learning mahmoodlab histology-images
  Python 0 4 0 0 Updated Jul 21, 2021

• TOAD

  AI-based pathology predicts origins for cancers of unknown primary - Nature

  cancer-imaging-research cancer-research histology pathology cancer-detection wsi histopathology
  Python AGPL-3.0 21 80 0 0 Updated May 6, 2021

• PORPOISE

  Pan-Cancer Integrative Histology-Genomic Analysis via Interpretable Multimodal Deep Learning

  genomics histology pan-cancer-analysis wsi-images mahmoodlab
  Python GPL-3.0 2 12 1 0 Updated Jan 21, 2021

• NucleiSegmentation

  cGAN-based Multi Organ Nuclei Segmentation

  gan segmentation nuclei pathology cgan histopathology
  Python 46 130 6 0 Updated May 8, 2019