saeyslab

Repositories

• PeacoQC

  Peak-based selection of high quality cytometry data
  R 0 5 0 0 Updated Feb 22, 2021

• FlowSOM

  Using self-organizing maps for visualization and interpretation of cytometry data
  R 3 4 0 0 Updated Feb 19, 2021

• nichenetr

  NicheNet: predict active ligand-target links between interacting cells

  rna-seq gene-expression network-inference data-integration single-cell-rna-seq single-cell-omics intercellular-communication
  R 45 124 1 0 Updated Feb 19, 2021

• multivap

  Multiclass generalization of the binary IVAP defense against adversarial examples
  Jupyter Notebook MIT 2 1 0 4 Updated Feb 2, 2021

• FlowSOM_protocol

  R code to demonstrate the FlowSOM analysis pipeline.
  R 0 0 0 0 Updated Dec 21, 2020

• cifconvert

  cifconvert is a package built on the python-bioformats package that saves images and masks from the proprietary Amnis CIF-file format to an HDF5 file.
  Python GPL-3.0 0 0 0 0 Updated Nov 30, 2020

• binary-ivap
  Jupyter Notebook GPL-3.0 1 2 0 1 Updated Nov 13, 2020

• DeepLearning_for_ImagingFlowCytometry

  A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry data.

  deep-learning image-classification keras-tensorflow imaging-flow-cytometry
  Python GPL-3.0 1 3 1 1 Updated Nov 13, 2020

• MFs_peripheralCentralNerveSystem

  Scripts of Ydens et al. Nature Neuroscience. 2020
  R 2 3 0 0 Updated Oct 20, 2020

• brainimmuneatlas

  Overview of the scripts used to analyse the brainimmuneatlas data
  R 6 12 2 1 Updated Oct 20, 2020

• PeacoQC_evaluation
  R 0 0 0 0 Updated Oct 2, 2020

• CYTOF_covid19_study

  R scripts to analyse the CYTOF data generated by the team of Frederik De Smet
  R 0 0 0 0 Updated Oct 1, 2020

• CytoNorm

  R library to normalize cytometry data
  R 3 9 13 0 Updated Mar 26, 2020

• FlowSOM_workshop

  Example usage of the FlowSOM package
  R 4 1 1 0 Updated Mar 23, 2020

• SCORPIUS

  Forked from rcannood/SCORPIUS

  Trajectory inference for single-cell RNA-seq
  R 10 0 0 0 Updated Dec 19, 2019

• CytoNorm_Figures

  Scripts to replicate the figures reported in the CytofNorm publication.
  R 0 0 0 0 Updated Aug 19, 2019

• Roquin-1-hyperinflammation

  Code to generate some of the results described by Tavernier et al.
  R 0 1 0 0 Updated Jul 22, 2019

• moduledetection-evaluation
  Python 9 20 3 0 Updated Jul 18, 2019

• Computational_Pipeline_CVID

  Code used to generate results for paper "A computational pipeline for the classification of CVID". This paper is submitted to Frontiers Immunology
  R 0 0 0 0 Updated Jul 4, 2019

• triwise

  An R package to analyze and visualize gene expression differences in three biological conditions
  R 0 2 1 0 Updated Mar 11, 2019

• Kiss_et_al_CellularImmunologyReview

  R code to replicate the tSNE and FlowSOM figures
  R 0 1 0 0 Updated Jan 8, 2018

• logo

  dambi logo
  0 0 0 0 Updated Jun 29, 2017

• saeyslab.github.io
  HTML 1 0 0 0 Updated Jun 6, 2017

• hooktest
  HTML 0 0 0 0 Updated Aug 22, 2016

• FloReMi

  Submission to the FlowCAP IV challenge: Survival time prediction based on flow cytometry data
  R 0 0 0 0 Updated Apr 19, 2016

• FlowCytometryScripts
  R GPL-3.0 9 17 0 0 Updated Apr 18, 2016