Open Chromosome Collective

pairtools Public
CLI tools to process mapped Hi-C data

Python 50 MIT 21 14 (4 issues need help) 2 Updated Apr 26, 2022
coolpuppy Public
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Python 43 MIT 12 5 0 Updated Apr 26, 2022
open2c_vignettes Public
A collection of notebooks and gists demonstrating novel applications of open2c ecosystem of tools

Jupyter Notebook 0 0 0 0 Updated Apr 22, 2022
cooltools Public
The tools for your .cool's

Jupyter Notebook 74 MIT 36 39 2 Updated Apr 22, 2022
bioframe Public
Pandas utilities for tab-delimited and other genomic data files

Python 83 MIT 12 15 0 Updated Apr 4, 2022
pairlib Public
Read, write and analyse Hi-C pairs

Python 3 MIT 0 4 0 Updated Apr 4, 2022
open2c_examples Public

Jupyter Notebook 9 5 5 1 Updated Mar 24, 2022
cooler Public
A cool place to store your Hi-C

Python 135 BSD-3-Clause 42 52 (2 issues need help) 0 Updated Mar 21, 2022
distiller-nf Public
A modular Hi-C mapping pipeline

Groovy 57 MIT 20 54 (2 issues need help) 2 Updated Mar 17, 2022
polychrom Public
Polymer simulations of chromosomes and generating "in silico" Hi-C maps

Python 25 MIT 13 8 (1 issue needs help) 2 Updated Mar 14, 2022

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